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4ZY2
Biol. Unit 1
Info
Asym.Unit (2.0 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
Biol.Unit 2, α-C (1.0 MB)
Biol.Unit 2 (1.0 MB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 10O
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
21 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
]
Hetero Components
(5, 44)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1aa: PENTAETHYLENE GLYCOL (1PEaa)
1ab: PENTAETHYLENE GLYCOL (1PEab)
1ac: PENTAETHYLENE GLYCOL (1PEac)
1ad: PENTAETHYLENE GLYCOL (1PEad)
1ae: PENTAETHYLENE GLYCOL (1PEae)
1af: PENTAETHYLENE GLYCOL (1PEaf)
1ag: PENTAETHYLENE GLYCOL (1PEag)
1ah: PENTAETHYLENE GLYCOL (1PEah)
1ai: PENTAETHYLENE GLYCOL (1PEai)
1aj: PENTAETHYLENE GLYCOL (1PEaj)
1ak: PENTAETHYLENE GLYCOL (1PEak)
1al: PENTAETHYLENE GLYCOL (1PEal)
1am: PENTAETHYLENE GLYCOL (1PEam)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
1u: PENTAETHYLENE GLYCOL (1PEu)
1v: PENTAETHYLENE GLYCOL (1PEv)
1w: PENTAETHYLENE GLYCOL (1PEw)
1x: PENTAETHYLENE GLYCOL (1PEx)
1y: PENTAETHYLENE GLYCOL (1PEy)
1z: PENTAETHYLENE GLYCOL (1PEz)
2a: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLa)
2b: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLb)
2c: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLc)
2d: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLd)
2e: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLe)
2f: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLf)
2g: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLg)
2h: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLh)
2i: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLi)
2j: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLj)
2k: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLk)
2l: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLl)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
5a: SULFATE ION (SO4a)
5aa: SULFATE ION (SO4aa)
5ab: SULFATE ION (SO4ab)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
5y: SULFATE ION (SO4y)
5z: SULFATE ION (SO4z)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
18
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4TL
6
Ligand/Ion
N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3',4',5'-TRIFLUOROBIPHENYL-4-YL)ETHYL]-2,2-DIMETHYLPROPANAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
5
SO4
13
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(61, 61)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI9 (SOFTWARE)
58: AJ1 (SOFTWARE)
59: AK4 (SOFTWARE)
60: AK5 (SOFTWARE)
61: AO5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:374 , ASP A:379 , ASP A:399 , GLU A:461 , ZN A:1003 , 4TL A:1008 , HOH A:1186
binding site for residue ZN A 1001
02
AC2
SOFTWARE
LYS A:374 , ALA A:460 , GLY A:462 , ARG A:463 , LEU A:487 , 4TL A:1008
binding site for residue CO3 A 1002
03
AC3
SOFTWARE
ASP A:379 , ASP A:459 , GLU A:461 , ZN A:1001 , 4TL A:1008
binding site for residue ZN A 1003
04
AC4
SOFTWARE
ILE A:101 , GLU A:102 , TYR A:103 , ASN A:104 , 1PE A:1006 , HOH A:1129
binding site for residue SO4 A 1004
05
AC5
SOFTWARE
GLY A:126 , LEU A:219 , SER A:220 , HOH A:1106 , LYS D:164
binding site for residue SO4 A 1005
06
AC6
SOFTWARE
TYR A:103 , GLU A:316 , LYS A:320 , SO4 A:1004
binding site for residue 1PE A 1006
07
AC7
SOFTWARE
ASN A:104 , HIS A:108 , TYR A:411
binding site for residue 1PE A 1007
08
AC8
SOFTWARE
LYS A:374 , ASP A:379 , LYS A:386 , GLY A:390 , MET A:392 , ASP A:459 , GLU A:461 , LEU A:487 , THR A:488 , GLY A:489 , LEU A:492 , ALA A:577 , PHE A:583 , ZN A:1001 , CO3 A:1002 , ZN A:1003 , HOH A:1179 , HOH A:1186
binding site for residue 4TL A 1008
09
AC9
SOFTWARE
PHE A:156 , ASN A:161 , LYS A:164 , PHE A:165 , TYR D:176 , MET D:177 , PHE D:178 , SER D:184
binding site for residue DMS A 1009
10
AD1
SOFTWARE
LYS B:374 , ASP B:379 , ASP B:399 , GLU B:461 , ZN B:1003 , 4TL B:1004 , HOH B:1193
binding site for residue ZN B 1001
11
AD2
SOFTWARE
LYS B:374 , ALA B:460 , GLY B:462 , ARG B:463 , LEU B:487 , 4TL B:1004
binding site for residue CO3 B 1002
12
AD3
SOFTWARE
ASP B:379 , ASP B:459 , GLU B:461 , ZN B:1001 , 4TL B:1004
binding site for residue ZN B 1003
13
AD4
SOFTWARE
LYS B:374 , ASP B:379 , LYS B:386 , GLY B:390 , MET B:392 , LEU B:395 , ASP B:459 , GLU B:461 , LEU B:487 , THR B:488 , GLY B:489 , LEU B:492 , ALA B:577 , PHE B:583 , ZN B:1001 , CO3 B:1002 , ZN B:1003 , HOH B:1191 , HOH B:1193
binding site for residue 4TL B 1004
14
AD5
SOFTWARE
TYR B:103 , GLU B:316 , LYS B:320 , 1PE B:1006 , 1PE H:1008
binding site for residue 1PE B 1005
15
AD6
SOFTWARE
TYR B:103 , HIS B:108 , LYS B:320 , 1PE B:1005 , 1PE H:1009
binding site for residue 1PE B 1006
16
AD7
SOFTWARE
LYS C:374 , ASP C:379 , ASP C:399 , GLU C:461 , ZN C:1003 , 4TL C:1011 , HOH C:1176
binding site for residue ZN C 1001
17
AD8
SOFTWARE
LYS C:374 , ALA C:460 , GLY C:462 , ARG C:463 , LEU C:487 , 4TL C:1011
binding site for residue CO3 C 1002
18
AD9
SOFTWARE
ASP C:379 , ASP C:459 , GLU C:461 , ZN C:1001 , 4TL C:1011
binding site for residue ZN C 1003
19
AE1
SOFTWARE
SER A:435 , LYS A:436 , SER B:435 , LYS B:436 , SER C:435 , LYS C:436 , HOH C:1181
binding site for residue SO4 C 1004
20
AE2
SOFTWARE
GLY C:126 , LEU C:219 , SER C:220 , LYS E:164
binding site for residue SO4 C 1005
21
AE3
SOFTWARE
ASN C:505 , ASN C:506 , THR C:569 , ALA C:570
binding site for residue SO4 C 1006
22
AE4
SOFTWARE
PHE C:156 , ASN C:161 , LYS C:164 , TYR E:176 , MET E:177 , PHE E:178 , SER E:184
binding site for residue SO4 C 1007
23
AE5
SOFTWARE
GLU C:102 , TYR C:103 , ASN C:104 , HOH C:1196
binding site for residue SO4 C 1008
24
AE6
SOFTWARE
TYR C:103 , ASN C:104 , HIS C:108 , PHE C:289 , LYS C:320 , TYR C:411 , HOH C:1157
binding site for residue 1PE C 1009
25
AE7
SOFTWARE
TYR C:103 , GLU C:316 , LYS C:320
binding site for residue 1PE C 1010
26
AE8
SOFTWARE
LYS C:374 , ASP C:379 , LYS C:386 , GLY C:390 , MET C:392 , ASP C:459 , GLU C:461 , LEU C:487 , THR C:488 , GLY C:489 , LEU C:492 , ALA C:577 , PHE C:583 , ZN C:1001 , CO3 C:1002 , ZN C:1003 , HOH C:1176 , HOH C:1273
binding site for residue 4TL C 1011
27
AE9
SOFTWARE
LYS D:374 , ASP D:379 , ASP D:399 , GLU D:461 , ZN D:1003 , 4TL D:1009 , HOH D:1210
binding site for residue ZN D 1001
28
AF1
SOFTWARE
LYS D:374 , ALA D:460 , GLU D:461 , GLY D:462 , ARG D:463 , LEU D:487 , 4TL D:1009
binding site for residue CO3 D 1002
29
AF2
SOFTWARE
ASP D:379 , ASP D:459 , GLU D:461 , ZN D:1001 , 4TL D:1009
binding site for residue ZN D 1003
30
AF3
SOFTWARE
TYR D:103 , ASN D:104 , HOH D:1333
binding site for residue SO4 D 1004
31
AF4
SOFTWARE
TYR D:103 , ASN D:104 , HIS D:108 , TYR D:411
binding site for residue 1PE D 1005
32
AF5
SOFTWARE
SER D:517 , LYS D:518 , VAL D:524
binding site for residue 1PE D 1006
33
AF6
SOFTWARE
LYS D:111 , GLU L:282 , ARG L:285 , 1PE L:1005
binding site for residue 1PE D 1007
34
AF7
SOFTWARE
TYR D:103 , GLU D:316 , LYS D:320
binding site for residue 1PE D 1008
35
AF8
SOFTWARE
LYS D:374 , ASP D:379 , LYS D:386 , GLY D:390 , MET D:392 , ASP D:459 , GLU D:461 , LEU D:487 , THR D:488 , GLY D:489 , LEU D:492 , ALA D:577 , PHE D:583 , ZN D:1001 , CO3 D:1002 , ZN D:1003 , HOH D:1148 , HOH D:1210
binding site for residue 4TL D 1009
36
AF9
SOFTWARE
LYS E:374 , ASP E:379 , ASP E:399 , GLU E:461 , ZN E:1003 , 4TL E:1009 , HOH E:1153
binding site for residue ZN E 1001
37
AG1
SOFTWARE
LYS E:374 , ALA E:460 , GLY E:462 , ARG E:463 , LEU E:487 , 4TL E:1009
binding site for residue CO3 E 1002
38
AG2
SOFTWARE
ASP E:379 , ASP E:459 , GLU E:461 , ZN E:1001 , 4TL E:1009
binding site for residue ZN E 1003
39
AG3
SOFTWARE
ASN E:505 , THR E:569 , ALA E:570 , HOH E:1101 , HOH E:1133
binding site for residue SO4 E 1004
40
AG4
SOFTWARE
TYR E:103 , ASN E:104 , 1PE E:1007 , HOH E:1230 , HOH E:1285
binding site for residue SO4 E 1005
41
AG5
SOFTWARE
SER E:86 , GLU E:87 , VAL E:88 , THR E:97 , ASN E:312 , HOH E:1112 , HOH E:1220
binding site for residue SO4 E 1006
42
AG6
SOFTWARE
TYR E:103 , GLU E:316 , LYS E:320 , SO4 E:1005 , HOH E:1171
binding site for residue 1PE E 1007
43
AG7
SOFTWARE
TYR E:103 , HIS E:108 , PHE E:289 , LYS E:320 , TYR E:411 , HOH E:1105
binding site for residue 1PE E 1008
44
AG8
SOFTWARE
LYS E:374 , ASP E:379 , LYS E:386 , GLY E:390 , MET E:392 , ASP E:459 , GLU E:461 , LEU E:487 , THR E:488 , GLY E:489 , LEU E:492 , ALA E:577 , PHE E:583 , ZN E:1001 , CO3 E:1002 , ZN E:1003 , HOH E:1153 , HOH E:1333
binding site for residue 4TL E 1009
45
AG9
SOFTWARE
SER E:93 , ASP E:95 , PRO E:96
binding site for residue 1PE E 1010
46
AH1
SOFTWARE
LYS F:374 , ASP F:379 , ASP F:399 , GLU F:461 , ZN F:1003 , 4TL F:1009 , HOH F:1201
binding site for residue ZN F 1001
47
AH2
SOFTWARE
LYS F:374 , ALA F:460 , GLU F:461 , GLY F:462 , ARG F:463 , LEU F:487 , 4TL F:1009
binding site for residue CO3 F 1002
48
AH3
SOFTWARE
ASP F:379 , ASP F:459 , GLU F:461 , ZN F:1001 , 4TL F:1009
binding site for residue ZN F 1003
49
AH4
SOFTWARE
SER D:435 , LYS D:436 , SER E:435 , LYS E:436 , SER F:435 , LYS F:436
binding site for residue SO4 F 1004
50
AH5
SOFTWARE
SER F:86 , GLU F:87 , VAL F:88 , THR F:97 , ASN F:312 , HOH F:1131
binding site for residue SO4 F 1005
51
AH6
SOFTWARE
TYR F:103 , ASN F:104 , HIS F:108 , TYR F:411
binding site for residue 1PE F 1006
52
AH7
SOFTWARE
TYR F:103 , GLU F:316 , LYS F:320 , HOH F:1122 , HOH F:1202
binding site for residue 1PE F 1007
53
AH8
SOFTWARE
SER D:254 , ASN F:449 , LYS F:451 , ASP F:543 , GLN F:567 , HOH F:1215
binding site for residue 1PE F 1008
54
AH9
SOFTWARE
LYS F:374 , ASP F:379 , LYS F:386 , GLY F:390 , MET F:392 , LEU F:395 , ASP F:459 , GLU F:461 , LEU F:487 , THR F:488 , GLY F:489 , LEU F:492 , ALA F:577 , PHE F:583 , ZN F:1001 , CO3 F:1002 , ZN F:1003 , HOH F:1179 , HOH F:1201
binding site for residue 4TL F 1009
55
AI1
SOFTWARE
TRP F:525 , TRP F:526 , HOH F:1125
binding site for residue 1PE F 1010
56
AI2
SOFTWARE
ASP F:95 , PRO F:96 , THR F:97
binding site for residue 1PE F 1011
57
AI9
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , TYR G:115 , ASN G:122 , GLU G:124 , TYR G:270 , 1PE G:1008 , HOH G:1151
binding site for residue 1PE G 1007
58
AJ1
SOFTWARE
ASN A:122 , ASN A:149 , ASN G:122 , 1PE G:1007 , HOH G:1132
binding site for residue 1PE G 1008
59
AK4
SOFTWARE
1PE B:1005 , TYR H:103 , HIS H:108 , PHE H:289 , LYS H:320 , TYR H:411
binding site for residue 1PE H 1008
60
AK5
SOFTWARE
1PE B:1006 , TYR H:103 , GLU H:316 , LYS H:320
binding site for residue 1PE H 1009
61
AO5
SOFTWARE
1PE D:1007 , TYR L:103 , ASN L:104 , HIS L:108 , LYS L:320 , TYR L:411 , 1PE L:1010
binding site for residue 1PE L 1005
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Show PDB file:
Asym.Unit (2.0 MB)
Header - Asym.Unit
Biol.Unit 1 (1.0 MB)
Header - Biol.Unit 1
Biol.Unit 2 (1.0 MB)
Header - Biol.Unit 2
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