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4ZY1
Biol. Unit 2
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Asym.Unit (1.9 MB)
Biol.Unit 1 (984 KB)
Biol.Unit 2 (985 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 10R
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
21 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
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Hetero Components
(5, 40)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
1u: PENTAETHYLENE GLYCOL (1PEu)
1v: PENTAETHYLENE GLYCOL (1PEv)
1w: PENTAETHYLENE GLYCOL (1PEw)
1x: PENTAETHYLENE GLYCOL (1PEx)
2a: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5a)
2b: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5b)
2c: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5c)
2d: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5d)
2e: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5e)
2f: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5f)
2g: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5g)
2h: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5h)
2i: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5i)
2j: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5j)
2k: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5k)
2l: N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-M... (4U5l)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: GLYCEROL (GOLa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
13
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4U5
6
Ligand/Ion
N-{(1R)-2-(HYDROXYAMINO)-1-[4-(1-METHYL-1H-PYRAZOL-4-YL)PHENYL]-2-OXOETHYL}-2,2-DIMETHYLPROPANAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
SO4
14
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(52, 52)
Info
All Sites
01: AH1 (SOFTWARE)
02: AH2 (SOFTWARE)
03: AH3 (SOFTWARE)
04: AH4 (SOFTWARE)
05: AH5 (SOFTWARE)
06: AH6 (SOFTWARE)
07: AH7 (SOFTWARE)
08: AH8 (SOFTWARE)
09: AH9 (SOFTWARE)
10: AI1 (SOFTWARE)
11: AI2 (SOFTWARE)
12: AI3 (SOFTWARE)
13: AI4 (SOFTWARE)
14: AI5 (SOFTWARE)
15: AI6 (SOFTWARE)
16: AI7 (SOFTWARE)
17: AI8 (SOFTWARE)
18: AI9 (SOFTWARE)
19: AJ1 (SOFTWARE)
20: AJ2 (SOFTWARE)
21: AJ3 (SOFTWARE)
22: AJ4 (SOFTWARE)
23: AJ5 (SOFTWARE)
24: AJ6 (SOFTWARE)
25: AJ7 (SOFTWARE)
26: AJ8 (SOFTWARE)
27: AJ9 (SOFTWARE)
28: AK1 (SOFTWARE)
29: AK2 (SOFTWARE)
30: AK3 (SOFTWARE)
31: AK4 (SOFTWARE)
32: AK5 (SOFTWARE)
33: AK6 (SOFTWARE)
34: AK7 (SOFTWARE)
35: AK8 (SOFTWARE)
36: AK9 (SOFTWARE)
37: AL1 (SOFTWARE)
38: AL2 (SOFTWARE)
39: AL3 (SOFTWARE)
40: AL4 (SOFTWARE)
41: AL5 (SOFTWARE)
42: AL6 (SOFTWARE)
43: AL7 (SOFTWARE)
44: AL8 (SOFTWARE)
45: AL9 (SOFTWARE)
46: AM1 (SOFTWARE)
47: AM2 (SOFTWARE)
48: AM3 (SOFTWARE)
49: AM4 (SOFTWARE)
50: AM5 (SOFTWARE)
51: AM6 (SOFTWARE)
52: AM7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AH1
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , MET G:392 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , ALA G:577 , ZN G:1002 , ZN G:1003 , CO3 G:1004
binding site for residue 4U5 G 1001
02
AH2
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , 4U5 G:1001 , ZN G:1003
binding site for residue ZN G 1002
03
AH3
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , 4U5 G:1001 , ZN G:1002
binding site for residue ZN G 1003
04
AH4
SOFTWARE
LYS G:374 , ALA G:460 , GLU G:461 , GLY G:462 , ARG G:463 , LEU G:487 , 4U5 G:1001
binding site for residue CO3 G 1004
05
AH5
SOFTWARE
GLU G:125 , GLY G:126 , LEU G:219 , SER G:220 , LYS J:164
binding site for residue SO4 G 1005
06
AH6
SOFTWARE
PHE G:156 , ASN G:161 , MET G:162 , LYS G:164 , PHE G:165 , MET J:177 , SER J:184
binding site for residue GOL G 1006
07
AH7
SOFTWARE
TYR G:103 , LYS G:320 , TYR G:411
binding site for residue 1PE G 1007
08
AH8
SOFTWARE
TYR G:115 , ASN G:122 , GLU G:124 , TYR G:270 , 1PE G:1009
binding site for residue 1PE G 1008
09
AH9
SOFTWARE
ASN G:122 , 1PE G:1008
binding site for residue 1PE G 1009
10
AI1
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , ASP H:459 , GLU H:461 , LEU H:487 , THR H:488 , GLY H:489 , ALA H:577 , ZN H:1002 , ZN H:1003 , CO3 H:1004 , HOH H:1107
binding site for residue 4U5 H 1001
11
AI2
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , 4U5 H:1001 , ZN H:1003
binding site for residue ZN H 1002
12
AI3
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , 4U5 H:1001 , ZN H:1002
binding site for residue ZN H 1003
13
AI4
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , 4U5 H:1001
binding site for residue CO3 H 1004
14
AI5
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
binding site for residue SO4 H 1005
15
AI6
SOFTWARE
ASN G:545 , SER G:549 , ARG H:586 , HOH H:1113
binding site for residue SO4 H 1006
16
AI7
SOFTWARE
TYR H:103 , GLU H:316 , LYS H:320
binding site for residue 1PE H 1007
17
AI8
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , ASP I:459 , GLU I:461 , LEU I:487 , THR I:488 , GLY I:489 , ALA I:577 , ZN I:1002 , ZN I:1003 , CO3 I:1004
binding site for residue 4U5 I 1001
18
AI9
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , 4U5 I:1001 , ZN I:1003
binding site for residue ZN I 1002
19
AJ1
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , 4U5 I:1001 , ZN I:1002
binding site for residue ZN I 1003
20
AJ2
SOFTWARE
LYS I:374 , ALA I:460 , GLY I:462 , ARG I:463 , LEU I:487 , 4U5 I:1001
binding site for residue CO3 I 1004
21
AJ3
SOFTWARE
ARG G:586 , ASN I:545 , SER I:549 , HOH I:1127
binding site for residue SO4 I 1005
22
AJ4
SOFTWARE
ASN H:545 , SER H:549 , ARG I:586
binding site for residue SO4 I 1006
23
AJ5
SOFTWARE
TYR I:103 , GLU I:316 , GLN I:319 , LYS I:320 , HOH I:1101
binding site for residue 1PE I 1007
24
AJ6
SOFTWARE
TYR I:103 , ASN I:104 , LYS I:320 , TYR I:411
binding site for residue 1PE I 1008
25
AJ7
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , LEU J:492 , ALA J:577 , PHE J:583 , ZN J:1002 , ZN J:1003 , CO3 J:1004
binding site for residue 4U5 J 1001
26
AJ8
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , 4U5 J:1001 , ZN J:1003
binding site for residue ZN J 1002
27
AJ9
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , 4U5 J:1001 , ZN J:1002
binding site for residue ZN J 1003
28
AK1
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , 4U5 J:1001
binding site for residue CO3 J 1004
29
AK2
SOFTWARE
ILE J:101 , GLU J:102 , TYR J:103 , ASN J:104
binding site for residue SO4 J 1005
30
AK3
SOFTWARE
ASN J:505 , ASN J:506 , THR J:569 , ALA J:570
binding site for residue SO4 J 1006
31
AK4
SOFTWARE
TYR J:103 , GLU J:316 , LYS J:320
binding site for residue 1PE J 1007
32
AK5
SOFTWARE
TYR J:103 , ASN J:104 , HIS J:108 , PHE J:289 , LYS J:320 , TYR J:411
binding site for residue 1PE J 1008
33
AK6
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , ASP K:459 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , ALA K:577 , PHE K:583 , ZN K:1002 , ZN K:1003 , CO3 K:1004 , HOH K:1182
binding site for residue 4U5 K 1001
34
AK7
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , 4U5 K:1001 , ZN K:1003
binding site for residue ZN K 1002
35
AK8
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , 4U5 K:1001 , ZN K:1002
binding site for residue ZN K 1003
36
AK9
SOFTWARE
LYS K:374 , ALA K:460 , GLU K:461 , GLY K:462 , ARG K:463 , LEU K:487 , 4U5 K:1001
binding site for residue CO3 K 1004
37
AL1
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 K 1005
38
AL2
SOFTWARE
ASN J:545 , ARG K:586
binding site for residue SO4 K 1006
39
AL3
SOFTWARE
TYR K:103 , ASN K:104 , 1PE K:1009
binding site for residue SO4 K 1007
40
AL4
SOFTWARE
GLU K:125 , GLY K:126 , LEU K:219 , SER K:220
binding site for residue SO4 K 1008
41
AL5
SOFTWARE
TYR K:103 , GLU K:316 , LYS K:320 , SO4 K:1007 , HOH K:1164
binding site for residue 1PE K 1009
42
AL6
SOFTWARE
TYR K:103 , ASN K:104 , PHE K:289 , TYR K:411
binding site for residue 1PE K 1010
43
AL7
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , PHE L:398 , ASN L:457 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , LEU L:492 , ALA L:577 , ZN L:1002 , ZN L:1003 , CO3 L:1004
binding site for residue 4U5 L 1001
44
AL8
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , 4U5 L:1001 , ZN L:1003
binding site for residue ZN L 1002
45
AL9
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , 4U5 L:1001 , ZN L:1002
binding site for residue ZN L 1003
46
AM1
SOFTWARE
LYS L:374 , ALA L:460 , GLU L:461 , GLY L:462 , ARG L:463 , LEU L:487 , 4U5 L:1001
binding site for residue CO3 L 1004
47
AM2
SOFTWARE
ARG J:586 , ASN L:545 , SER L:549 , HOH L:1109
binding site for residue SO4 L 1005
48
AM3
SOFTWARE
ASN K:545 , SER K:549 , ARG L:586 , HOH L:1156
binding site for residue SO4 L 1006
49
AM4
SOFTWARE
ILE L:101 , GLU L:102 , TYR L:103 , ASN L:104 , 1PE L:1010
binding site for residue SO4 L 1007
50
AM5
SOFTWARE
ALA G:201 , TYR G:499 , ILE L:529 , ILE L:530 , ASN L:531 , GLU L:532
binding site for residue 1PE L 1008
51
AM6
SOFTWARE
TYR L:103 , HIS L:108 , TYR L:411
binding site for residue 1PE L 1009
52
AM7
SOFTWARE
TYR L:103 , ASN L:104 , GLU L:316 , LYS L:320 , SO4 L:1007 , HOH L:1102
binding site for residue 1PE L 1010
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SAPs(SNPs)/Variants
(0, 0)
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