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Biol. Unit 1
Info
Asym.Unit (581 KB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
STRUCTURE OF THE HUMAN INSULIN RECEPTOR ECTODOMAIN, IRDELTABETA CONSTRUCT, IN COMPLEX WITH FOUR FAB MOLECULES
Authors
:
T. Croll, B. J. Smith, M. B. Margetts, J. Whittaker, M. A. Weiss, C. W. War M. C. Lawrence
Date
:
20 May 15 (Deposition) - 24 Feb 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Receptor Tyrosine Kinase Extracellular Domain Antibody Fragments, Hormone Receptor-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. I. Croll, B. J. Smith, M. B. Margetts, J. Whittaker, M. A. Weiss, C. W. Ward, M. C. Lawrence
Higher-Resolution Structure Of The Human Insulin Receptor Ectodomain: Multi-Modal Inclusion Of The Insert Domain.
Structure V. 24 469 2016
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Hetero Components
(4, 50)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
3a: ALPHA-D-MANNOSE (MANa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
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No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
FUC
12
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN E:16
binding site for Mono-Saccharide NAG E 1001 bound to ASN E 16
02
AC2
SOFTWARE
GLU E:6 , GLU E:22 , GLU E:24 , ASN E:25
binding site for Poly-Saccharide residues NAG E 1002 through FUC E 1004 bound to ASN E 25
03
AC3
SOFTWARE
ASN E:111 , THR E:113 , SER E:134 , ARG E:135 , ILE E:136 , LEU E:137 , ASP E:138 , SER E:198 , LEU E:213 , ARG E:229
binding site for Poly-Saccharide residues NAG E 1005 through BMA E 1007 bound to ASN E 111
04
AC4
SOFTWARE
ASN E:108 , MET E:110 , LYS E:190 , ASN E:215
binding site for Mono-Saccharide NAG E 1008 bound to ASN E 215
05
AC5
SOFTWARE
ASP A:54 , ASN A:56 , ARG E:252 , ASN E:255 , PHE E:258
binding site for Poly-Saccharide residues NAG E 1009 through FUC E 1011 bound to ASN E 255
06
AC6
SOFTWARE
LYS C:205 , ASP C:207 , LYS C:208 , GLU D:123 , ASN E:397
binding site for Poly-Saccharide residues NAG E 1012 through FUC E 1017 bound to ASN E 397
07
AC7
SOFTWARE
ASN E:418 , THR E:420
binding site for Poly-Saccharide residues NAG E 1018 through FUC E 1019 bound to ASN E 418
08
AC8
SOFTWARE
ASN E:514
binding site for Mono-Saccharide NAG E 1020 bound to ASN E 514
09
AC9
SOFTWARE
ASN E:606 , VAL E:769 , SER E:771
binding site for Poly-Saccharide residues NAG E 1021 through FUC E 1023 bound to ASN E 606
10
AD1
SOFTWARE
ASN E:881 , TYR E:902
binding site for Poly-Saccharide residues NAG E 1024 through FUC E 1025 bound to ASN E 881
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0 ; only for superseded entry 2DTG: 8,12)
Info
All SCOP Domains
1a: SCOP_d2dtge1 ()
1b: SCOP_d2dtge2 ()
1c: SCOP_d2dtge3 ()
2a: SCOP_d2dtga1 ()
2b: SCOP_d2dtgc2 ()
3a: SCOP_d2dtgb2 ()
4a: SCOP_d2dtgc1 ()
5a: SCOP_d2dtgb1 ()
6a: SCOP_d2dtgd1 ()
7a: SCOP_d2dtge4 ()
7b: SCOP_d2dtge5 ()
8a: SCOP_d2dtge6 ()
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CATH Domains
(0, 0 ; only for superseded entry 2DTG: 3,14)
Info
all CATH domains
1a: CATH_2dtgE01 ()
1b: CATH_2dtgE03 ()
2a: CATH_2dtgE02 ()
3a: CATH_2dtgD02 ()
3b: CATH_2dtgA02 ()
3c: CATH_2dtgC02 ()
3d: CATH_2dtgB01 ()
3e: CATH_2dtgA01 ()
3f: CATH_2dtgE06 ()
3g: CATH_2dtgE05 ()
3h: CATH_2dtgE04 ()
3i: CATH_2dtgB02 ()
3j: CATH_2dtgC01 ()
3k: CATH_2dtgD01 ()
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Pfam Domains
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Asym.Unit (581 KB)
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