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4ZX9
Biol. Unit 2
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Asym.Unit (996 KB)
Biol.Unit 1 (496 KB)
Biol.Unit 2 (499 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 10B
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
20 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
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Hetero Components
(6, 36)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
2a: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKa)
2b: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKb)
2c: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKc)
2d: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKd)
2e: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKe)
2f: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKf)
2g: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKg)
2h: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKh)
2i: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKi)
2j: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKj)
2k: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKk)
2l: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKl)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
7e: ZINC ION (ZNe)
7f: ZINC ION (ZNf)
7g: ZINC ION (ZNg)
7h: ZINC ION (ZNh)
7i: ZINC ION (ZNi)
7j: ZINC ION (ZNj)
7k: ZINC ION (ZNk)
7l: ZINC ION (ZNl)
7m: ZINC ION (ZNm)
7n: ZINC ION (ZNn)
7o: ZINC ION (ZNo)
7p: ZINC ION (ZNp)
7q: ZINC ION (ZNq)
7r: ZINC ION (ZNr)
7s: ZINC ION (ZNs)
7t: ZINC ION (ZNt)
7u: ZINC ION (ZNu)
7v: ZINC ION (ZNv)
7w: ZINC ION (ZNw)
7x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
10
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4TK
6
Ligand/Ion
N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDROXYAMINO)-2-OXOETHYL]-2,2-DIMETHYLPROPANAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DMS
3
Ligand/Ion
DIMETHYL SULFOXIDE
5
GOL
3
Ligand/Ion
GLYCEROL
6
SO4
8
Ligand/Ion
SULFATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC5 (SOFTWARE)
02: AG6 (SOFTWARE)
03: AG7 (SOFTWARE)
04: AG8 (SOFTWARE)
05: AG9 (SOFTWARE)
06: AH1 (SOFTWARE)
07: AH2 (SOFTWARE)
08: AH3 (SOFTWARE)
09: AH4 (SOFTWARE)
10: AH5 (SOFTWARE)
11: AH6 (SOFTWARE)
12: AH7 (SOFTWARE)
13: AH8 (SOFTWARE)
14: AH9 (SOFTWARE)
15: AI1 (SOFTWARE)
16: AI2 (SOFTWARE)
17: AI3 (SOFTWARE)
18: AI4 (SOFTWARE)
19: AI5 (SOFTWARE)
20: AI6 (SOFTWARE)
21: AI7 (SOFTWARE)
22: AI8 (SOFTWARE)
23: AI9 (SOFTWARE)
24: AJ1 (SOFTWARE)
25: AJ2 (SOFTWARE)
26: AJ3 (SOFTWARE)
27: AJ4 (SOFTWARE)
28: AJ5 (SOFTWARE)
29: AJ6 (SOFTWARE)
30: AJ7 (SOFTWARE)
31: AJ8 (SOFTWARE)
32: AJ9 (SOFTWARE)
33: AK1 (SOFTWARE)
34: AK2 (SOFTWARE)
35: AK3 (SOFTWARE)
36: AK4 (SOFTWARE)
37: AK5 (SOFTWARE)
38: AK6 (SOFTWARE)
39: AK7 (SOFTWARE)
40: AK8 (SOFTWARE)
41: AK9 (SOFTWARE)
42: AL1 (SOFTWARE)
43: AL2 (SOFTWARE)
44: AL3 (SOFTWARE)
45: AL4 (SOFTWARE)
46: AL5 (SOFTWARE)
47: AL6 (SOFTWARE)
48: AL7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
GLY A:126 , LYS A:218 , LEU A:219 , SER A:220 , LYS D:164 , LYS G:111 , HIS G:266
binding site for residue GOL A 1005
02
AG6
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , MET G:392 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , ZN G:1002 , ZN G:1003 , CO3 G:1004
binding site for residue 4TK G 1001
03
AG7
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , 4TK G:1001 , ZN G:1003
binding site for residue ZN G 1002
04
AG8
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , 4TK G:1001 , ZN G:1002
binding site for residue ZN G 1003
05
AG9
SOFTWARE
LYS G:374 , ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , 4TK G:1001
binding site for residue CO3 G 1004
06
AH1
SOFTWARE
GLY G:390 , SER G:391 , MET G:392 , ASP G:394
binding site for residue GOL G 1005
07
AH2
SOFTWARE
TYR G:480 , LYS G:512 , ASP G:603
binding site for residue DMS G 1006
08
AH3
SOFTWARE
TYR G:103 , ASN G:104 , TYR G:411 , HOH G:1156
binding site for residue 1PE G 1007
09
AH4
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , TYR G:115 , ASN G:122 , TYR G:270 , 1PE G:1009
binding site for residue 1PE G 1008
10
AH5
SOFTWARE
ASN A:122 , ASN G:122 , 1PE G:1008 , HOH G:1153
binding site for residue 1PE G 1009
11
AH6
SOFTWARE
ILE G:101 , TYR G:103 , ASN G:104
binding site for residue SO4 G 1010
12
AH7
SOFTWARE
GLY G:126 , LEU G:219 , SER G:220 , HOH G:1101 , LYS J:164
binding site for residue SO4 G 1011
13
AH8
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , MET H:392 , ASP H:459 , GLU H:461 , THR H:486 , LEU H:487 , THR H:488 , GLY H:489 , ZN H:1002 , ZN H:1003 , CO3 H:1004 , HOH H:1135
binding site for residue 4TK H 1001
14
AH9
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , 4TK H:1001 , ZN H:1003 , HOH H:1135
binding site for residue ZN H 1002
15
AI1
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , 4TK H:1001 , ZN H:1002
binding site for residue ZN H 1003
16
AI2
SOFTWARE
ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , 4TK H:1001
binding site for residue CO3 H 1004
17
AI3
SOFTWARE
TYR H:103 , TYR H:411
binding site for residue 1PE H 1005
18
AI4
SOFTWARE
TYR H:103 , GLU H:316 , LYS H:320
binding site for residue 1PE H 1006
19
AI5
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
binding site for residue SO4 H 1007
20
AI6
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , MET I:392 , ASP I:459 , GLU I:461 , LEU I:487 , THR I:488 , GLY I:489 , SER I:554 , ZN I:1002 , ZN I:1003 , CO3 I:1004
binding site for residue 4TK I 1001
21
AI7
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , 4TK I:1001 , ZN I:1003
binding site for residue ZN I 1002
22
AI8
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , 4TK I:1001 , ZN I:1002
binding site for residue ZN I 1003
23
AI9
SOFTWARE
LYS I:374 , ALA I:460 , GLY I:462 , ARG I:463 , LEU I:487 , 4TK I:1001
binding site for residue CO3 I 1004
24
AJ1
SOFTWARE
ILE I:529 , ILE I:530 , ASN I:531 , GLU I:532 , TYR J:499
binding site for residue GOL I 1005
25
AJ2
SOFTWARE
TYR I:325
binding site for residue DMS I 1006
26
AJ3
SOFTWARE
TYR I:103 , GLU I:316 , GLN I:319 , LYS I:320 , SO4 I:1009
binding site for residue 1PE I 1007
27
AJ4
SOFTWARE
TYR I:103 , HIS I:108 , LYS I:320 , TYR I:411
binding site for residue 1PE I 1008
28
AJ5
SOFTWARE
GLU I:102 , TYR I:103 , ASN I:104 , 1PE I:1007
binding site for residue SO4 I 1009
29
AJ6
SOFTWARE
GLY I:126 , LEU I:219 , SER I:220
binding site for residue SO4 I 1010
30
AJ7
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , MET J:392 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ZN J:1002 , ZN J:1003 , CO3 J:1004 , HOH J:1116
binding site for residue 4TK J 1001
31
AJ8
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , 4TK J:1001 , ZN J:1003
binding site for residue ZN J 1002
32
AJ9
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , 4TK J:1001 , ZN J:1002
binding site for residue ZN J 1003
33
AK1
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , 4TK J:1001
binding site for residue CO3 J 1004
34
AK2
SOFTWARE
GLU J:508
binding site for residue GOL J 1005
35
AK3
SOFTWARE
TYR J:103 , ASN J:104 , HIS J:108 , PHE J:289 , LYS J:320 , TYR J:411
binding site for residue 1PE J 1007
36
AK4
SOFTWARE
PHE G:156 , LYS G:164 , PHE G:165 , TYR J:176 , MET J:177 , PHE J:178 , SER J:184
binding site for residue SO4 J 1008
37
AK5
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 J 1009
38
AK6
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , MET K:392 , PHE K:398 , ASP K:459 , GLU K:461 , THR K:486 , LEU K:487 , THR K:488 , GLY K:489 , ALA K:577 , ZN K:1002 , ZN K:1003 , CO3 K:1004
binding site for residue 4TK K 1001
39
AK7
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , 4TK K:1001 , ZN K:1003
binding site for residue ZN K 1002
40
AK8
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , 4TK K:1001 , ZN K:1002
binding site for residue ZN K 1003
41
AK9
SOFTWARE
ALA K:460 , GLY K:462 , ARG K:463 , LEU K:487 , 4TK K:1001
binding site for residue CO3 K 1004
42
AL1
SOFTWARE
TYR K:103 , PHE K:289 , TYR K:411
binding site for residue 1PE K 1005
43
AL2
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , MET L:392 , ASP L:459 , GLU L:461 , THR L:486 , LEU L:487 , THR L:488 , GLY L:489 , ALA L:577 , ZN L:1002 , ZN L:1003 , CO3 L:1004 , HOH L:1138 , HOH L:1143
binding site for residue 4TK L 1001
44
AL3
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , 4TK L:1001 , ZN L:1003 , HOH L:1138
binding site for residue ZN L 1002
45
AL4
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , 4TK L:1001 , ZN L:1002
binding site for residue ZN L 1003
46
AL5
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , 4TK L:1001
binding site for residue CO3 L 1004
47
AL6
SOFTWARE
TYR L:103 , ASN L:104 , LYS L:320 , TYR L:411
binding site for residue 1PE L 1005
48
AL7
SOFTWARE
GLU L:102 , TYR L:103 , ASN L:104
binding site for residue SO4 L 1006
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(0, 0)
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