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Biol. Unit 1
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Asym.Unit (996 KB)
Biol.Unit 1 (496 KB)
Biol.Unit 2 (499 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 10B
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
20 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
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Hetero Components
(6, 29)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
2a: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKa)
2b: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKb)
2c: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKc)
2d: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKd)
2e: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKe)
2f: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKf)
2g: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKg)
2h: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKh)
2i: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKi)
2j: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKj)
2k: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKk)
2l: N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDRO... (4TKl)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
7e: ZINC ION (ZNe)
7f: ZINC ION (ZNf)
7g: ZINC ION (ZNg)
7h: ZINC ION (ZNh)
7i: ZINC ION (ZNi)
7j: ZINC ION (ZNj)
7k: ZINC ION (ZNk)
7l: ZINC ION (ZNl)
7m: ZINC ION (ZNm)
7n: ZINC ION (ZNn)
7o: ZINC ION (ZNo)
7p: ZINC ION (ZNp)
7q: ZINC ION (ZNq)
7r: ZINC ION (ZNr)
7s: ZINC ION (ZNs)
7t: ZINC ION (ZNt)
7u: ZINC ION (ZNu)
7v: ZINC ION (ZNv)
7w: ZINC ION (ZNw)
7x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
10
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4TK
6
Ligand/Ion
N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDROXYAMINO)-2-OXOETHYL]-2,2-DIMETHYLPROPANAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
5
GOL
2
Ligand/Ion
GLYCEROL
6
SO4
3
Ligand/Ion
SULFATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AH4 (SOFTWARE)
43: AH5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:374 , ASP A:379 , LYS A:386 , MET A:392 , PHE A:398 , ASP A:459 , GLU A:461 , LEU A:487 , THR A:488 , GLY A:489 , SER A:554 , ZN A:1002 , ZN A:1003 , CO3 A:1004 , HOH A:1124
binding site for residue 4TK A 1001
02
AC2
SOFTWARE
LYS A:374 , ASP A:379 , ASP A:399 , GLU A:461 , 4TK A:1001 , ZN A:1003
binding site for residue ZN A 1002
03
AC3
SOFTWARE
ASP A:379 , ASP A:459 , GLU A:461 , 4TK A:1001 , ZN A:1002
binding site for residue ZN A 1003
04
AC4
SOFTWARE
LYS A:374 , ALA A:460 , GLY A:462 , ARG A:463 , LEU A:487 , 4TK A:1001
binding site for residue CO3 A 1004
05
AC5
SOFTWARE
GLY A:126 , LYS A:218 , LEU A:219 , SER A:220 , LYS D:164 , LYS G:111 , HIS G:266
binding site for residue GOL A 1005
06
AC6
SOFTWARE
TYR A:103 , ASN A:104 , HIS A:108 , LYS A:320 , TYR A:411 , HOH A:1104
binding site for residue 1PE A 1006
07
AC7
SOFTWARE
TYR A:103 , ASN A:104 , GLU A:316 , LYS A:320 , SO4 A:1008
binding site for residue 1PE A 1007
08
AC8
SOFTWARE
ILE A:101 , TYR A:103 , ASN A:104 , 1PE A:1007
binding site for residue SO4 A 1008
09
AC9
SOFTWARE
LYS B:374 , ASP B:379 , LYS B:386 , ASP B:459 , GLU B:461 , LEU B:487 , GLY B:489 , ZN B:1002 , ZN B:1003 , CO3 B:1004
binding site for residue 4TK B 1001
10
AD1
SOFTWARE
LYS B:374 , ASP B:379 , ASP B:399 , GLU B:461 , 4TK B:1001 , ZN B:1003
binding site for residue ZN B 1002
11
AD2
SOFTWARE
ASP B:379 , ASP B:459 , GLU B:461 , 4TK B:1001 , ZN B:1002
binding site for residue ZN B 1003
12
AD3
SOFTWARE
LYS B:374 , ALA B:460 , GLY B:462 , ARG B:463 , LEU B:487 , 4TK B:1001
binding site for residue CO3 B 1004
13
AD4
SOFTWARE
GLY B:329 , VAL B:330 , LYS B:331 , GLU B:332 , LYS B:353 , HOH B:1156
binding site for residue GOL B 1005
14
AD5
SOFTWARE
TYR B:103 , LYS B:320 , TYR B:411
binding site for residue 1PE B 1006
15
AD6
SOFTWARE
SER A:435 , LYS A:436 , SER B:435 , LYS B:436 , SER C:435 , LYS C:436
binding site for residue SO4 B 1007
16
AD7
SOFTWARE
LYS C:374 , ASP C:379 , LYS C:386 , MET C:392 , ASP C:459 , GLU C:461 , THR C:486 , LEU C:487 , THR C:488 , GLY C:489 , ALA C:577 , ZN C:1002 , ZN C:1003 , CO3 C:1004
binding site for residue 4TK C 1001
17
AD8
SOFTWARE
LYS C:374 , ASP C:379 , ASP C:399 , GLU C:461 , 4TK C:1001 , ZN C:1003
binding site for residue ZN C 1002
18
AD9
SOFTWARE
ASP C:379 , ASP C:459 , GLU C:461 , 4TK C:1001 , ZN C:1002
binding site for residue ZN C 1003
19
AE1
SOFTWARE
LYS C:374 , ALA C:460 , GLU C:461 , GLY C:462 , ARG C:463 , LEU C:487 , 4TK C:1001
binding site for residue CO3 C 1004
20
AE2
SOFTWARE
ASN C:505 , ASN C:568
binding site for residue DMS C 1005
21
AE3
SOFTWARE
TYR C:103 , GLU C:316 , GLN C:319 , LYS C:320 , 1PE C:1007 , HOH C:1131
binding site for residue 1PE C 1006
22
AE4
SOFTWARE
TYR C:103 , ASN C:104 , HIS C:108 , TYR C:411 , 1PE C:1006 , HOH C:1116
binding site for residue 1PE C 1007
23
AE5
SOFTWARE
LYS D:374 , ASP D:379 , LYS D:386 , MET D:392 , ASP D:459 , GLU D:461 , THR D:486 , LEU D:487 , THR D:488 , GLY D:489 , ZN D:1002 , ZN D:1003 , CO3 D:1004
binding site for residue 4TK D 1001
24
AE6
SOFTWARE
LYS D:374 , ASP D:379 , ASP D:399 , GLU D:461 , 4TK D:1001 , ZN D:1003
binding site for residue ZN D 1002
25
AE7
SOFTWARE
ASP D:379 , ASP D:459 , GLU D:461 , 4TK D:1001 , ZN D:1002
binding site for residue ZN D 1003
26
AE8
SOFTWARE
ALA D:460 , GLY D:462 , ARG D:463 , LEU D:487 , 4TK D:1001
binding site for residue CO3 D 1004
27
AE9
SOFTWARE
PHE A:156 , ASN A:161 , PHE A:165 , MET D:177 , SER D:184
binding site for residue DMS D 1005
28
AF1
SOFTWARE
TYR D:103 , GLU D:316 , LYS D:320
binding site for residue 1PE D 1006
29
AF2
SOFTWARE
TYR D:103 , ASN D:104 , HIS D:108 , PHE D:289 , LYS D:320 , TYR D:411
binding site for residue 1PE D 1007
30
AF3
SOFTWARE
SER D:435 , LYS D:436 , SER E:435 , LYS E:436 , SER F:435 , LYS F:436
binding site for residue SO4 D 1008
31
AF4
SOFTWARE
LYS E:374 , ASP E:379 , LYS E:386 , ASP E:459 , GLU E:461 , THR E:486 , LEU E:487 , THR E:488 , GLY E:489 , ZN E:1002 , ZN E:1003 , CO3 E:1004
binding site for residue 4TK E 1001
32
AF5
SOFTWARE
LYS E:374 , ASP E:379 , ASP E:399 , GLU E:461 , 4TK E:1001 , ZN E:1003
binding site for residue ZN E 1002
33
AF6
SOFTWARE
ASP E:379 , ASP E:459 , GLU E:461 , 4TK E:1001 , ZN E:1002
binding site for residue ZN E 1003
34
AF7
SOFTWARE
LYS E:374 , ALA E:460 , GLY E:462 , ARG E:463 , LEU E:487 , 4TK E:1001
binding site for residue CO3 E 1004
35
AF8
SOFTWARE
TYR E:103 , GLU E:316 , LYS E:320 , HOH E:1114
binding site for residue 1PE E 1005
36
AF9
SOFTWARE
TYR E:103 , HIS E:108 , LYS E:320 , TYR E:411 , HOH E:1120
binding site for residue 1PE E 1006
37
AG1
SOFTWARE
LYS F:374 , ASP F:379 , LYS F:386 , MET F:392 , ASP F:459 , GLU F:461 , LEU F:487 , THR F:488 , GLY F:489 , ZN F:1002 , ZN F:1003 , CO3 F:1004
binding site for residue 4TK F 1001
38
AG2
SOFTWARE
LYS F:374 , ASP F:379 , ASP F:399 , GLU F:461 , 4TK F:1001 , ZN F:1003
binding site for residue ZN F 1002
39
AG3
SOFTWARE
ASP F:379 , ASP F:459 , GLU F:461 , 4TK F:1001 , ZN F:1002
binding site for residue ZN F 1003
40
AG4
SOFTWARE
LYS F:374 , ALA F:460 , GLU F:461 , GLY F:462 , ARG F:463 , LEU F:487 , 4TK F:1001
binding site for residue CO3 F 1004
41
AG5
SOFTWARE
TYR F:103 , HIS F:108 , PHE F:289 , TYR F:411 , HOH F:1150
binding site for residue 1PE F 1005
42
AH4
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , TYR G:115 , ASN G:122 , TYR G:270 , 1PE G:1009
binding site for residue 1PE G 1008
43
AH5
SOFTWARE
ASN A:122 , ASN G:122 , 1PE G:1008 , HOH G:1153
binding site for residue 1PE G 1009
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