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Biol. Unit 2
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Asym.Unit (1012 KB)
Biol.Unit 1 (504 KB)
Biol.Unit 2 (505 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 9B
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
20 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
1u: PENTAETHYLENE GLYCOL (1PEu)
1v: PENTAETHYLENE GLYCOL (1PEv)
1w: PENTAETHYLENE GLYCOL (1PEw)
1x: PENTAETHYLENE GLYCOL (1PEx)
1y: PENTAETHYLENE GLYCOL (1PEy)
1z: PENTAETHYLENE GLYCOL (1PEz)
2a: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYa)
2b: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYb)
2c: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYc)
2d: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYd)
2e: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYe)
2f: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYf)
2g: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYg)
2h: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYh)
2i: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYi)
2j: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYj)
2k: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYk)
2l: TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)... (4TYl)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: DIMETHYL SULFOXIDE (DMSa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
7e: ZINC ION (ZNe)
7f: ZINC ION (ZNf)
7g: ZINC ION (ZNg)
7h: ZINC ION (ZNh)
7i: ZINC ION (ZNi)
7j: ZINC ION (ZNj)
7k: ZINC ION (ZNk)
7l: ZINC ION (ZNl)
7m: ZINC ION (ZNm)
7n: ZINC ION (ZNn)
7o: ZINC ION (ZNo)
7p: ZINC ION (ZNp)
7q: ZINC ION (ZNq)
7r: ZINC ION (ZNr)
7s: ZINC ION (ZNs)
7t: ZINC ION (ZNt)
7u: ZINC ION (ZNu)
7v: ZINC ION (ZNv)
7w: ZINC ION (ZNw)
7x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
11
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4TY
6
Ligand/Ion
TERT-BUTYL [(1R)-1-(4-BROMOPHENYL)-2-(HYDROXYAMINO)-2-OXOETHYL]CARBAMATE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DMS
-1
Ligand/Ion
DIMETHYL SULFOXIDE
5
GOL
1
Ligand/Ion
GLYCEROL
6
SO4
6
Ligand/Ion
SULFATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC5 (SOFTWARE)
02: AD1 (SOFTWARE)
03: AD2 (SOFTWARE)
04: AG1 (SOFTWARE)
05: AH5 (SOFTWARE)
06: AH8 (SOFTWARE)
07: AH9 (SOFTWARE)
08: AI1 (SOFTWARE)
09: AI2 (SOFTWARE)
10: AI3 (SOFTWARE)
11: AI4 (SOFTWARE)
12: AI5 (SOFTWARE)
13: AI6 (SOFTWARE)
14: AI7 (SOFTWARE)
15: AI8 (SOFTWARE)
16: AI9 (SOFTWARE)
17: AJ1 (SOFTWARE)
18: AJ2 (SOFTWARE)
19: AJ3 (SOFTWARE)
20: AJ4 (SOFTWARE)
21: AJ5 (SOFTWARE)
22: AJ6 (SOFTWARE)
23: AJ7 (SOFTWARE)
24: AJ8 (SOFTWARE)
25: AJ9 (SOFTWARE)
26: AK1 (SOFTWARE)
27: AK2 (SOFTWARE)
28: AK3 (SOFTWARE)
29: AK4 (SOFTWARE)
30: AK5 (SOFTWARE)
31: AK6 (SOFTWARE)
32: AK7 (SOFTWARE)
33: AK8 (SOFTWARE)
34: AK9 (SOFTWARE)
35: AL1 (SOFTWARE)
36: AL2 (SOFTWARE)
37: AL3 (SOFTWARE)
38: AL4 (SOFTWARE)
39: AL5 (SOFTWARE)
40: AL6 (SOFTWARE)
41: AL7 (SOFTWARE)
42: AL8 (SOFTWARE)
43: AL9 (SOFTWARE)
44: AM1 (SOFTWARE)
45: AM2 (SOFTWARE)
46: AM3 (SOFTWARE)
47: AM4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
GLU A:125 , GLY A:126 , SER A:220 , LYS G:111 , HIS G:266
binding site for residue GOL A 1005
02
AD1
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , 1PE A:1011 , TYR G:115 , ASN G:122 , GLU G:124 , TYR G:270
binding site for residue 1PE A 1010
03
AD2
SOFTWARE
ASN A:122 , 1PE A:1010 , ASN G:122
binding site for residue 1PE A 1011
04
AG1
SOFTWARE
GLU E:125 , GLY E:126 , SER E:220 , ALA G:85
binding site for residue GOL E 1005
05
AH5
SOFTWARE
TYR F:103 , ASN F:104 , GLU F:316 , LYS F:320 , SO4 F:1011 , ASN J:181
binding site for residue 1PE F 1009
06
AH8
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , PHE G:398 , ASN G:457 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , SER G:554 , ZN G:1002 , ZN G:1003 , CO3 G:1004 , HOH G:1159
binding site for residue 4TY G 1001
07
AH9
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , 4TY G:1001 , ZN G:1003
binding site for residue ZN G 1002
08
AI1
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , 4TY G:1001 , ZN G:1002
binding site for residue ZN G 1003
09
AI2
SOFTWARE
LYS G:374 , ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , 4TY G:1001
binding site for residue CO3 G 1004
10
AI3
SOFTWARE
TYR G:103 , HIS G:108 , LYS G:320 , TYR G:411
binding site for residue 1PE G 1005
11
AI4
SOFTWARE
ASN G:104 , GLU G:316 , LYS G:320
binding site for residue 1PE G 1006
12
AI5
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , PHE H:398 , ASN H:457 , ASP H:459 , GLU H:461 , LEU H:487 , GLY H:489 , ZN H:1002 , ZN H:1003 , CO3 H:1004 , HOH H:1146 , HOH H:1178
binding site for residue 4TY H 1001
13
AI6
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , 4TY H:1001 , ZN H:1003 , HOH H:1146
binding site for residue ZN H 1002
14
AI7
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , 4TY H:1001 , ZN H:1002
binding site for residue ZN H 1003
15
AI8
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , 4TY H:1001
binding site for residue CO3 H 1004
16
AI9
SOFTWARE
TYR H:103 , TYR H:411
binding site for residue 1PE H 1005
17
AJ1
SOFTWARE
TYR H:103 , GLU H:316 , LYS H:320
binding site for residue 1PE H 1006
18
AJ2
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
binding site for residue SO4 H 1007
19
AJ3
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , PHE I:398 , ASN I:457 , ASP I:459 , GLU I:461 , THR I:486 , LEU I:487 , THR I:488 , GLY I:489 , ZN I:1002 , ZN I:1003 , CO3 I:1004 , HOH I:1190
binding site for residue 4TY I 1001
20
AJ4
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , 4TY I:1001 , ZN I:1003
binding site for residue ZN I 1002
21
AJ5
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , 4TY I:1001 , ZN I:1002
binding site for residue ZN I 1003
22
AJ6
SOFTWARE
LYS I:374 , ALA I:460 , GLY I:462 , ARG I:463 , LEU I:487 , 4TY I:1001
binding site for residue CO3 I 1004
23
AJ7
SOFTWARE
ILE I:529 , ASN I:531 , GLU I:532 , SER J:199 , TYR J:499
binding site for residue GOL I 1005
24
AJ8
SOFTWARE
TYR I:103 , GLU I:316 , LYS I:320
binding site for residue 1PE I 1006
25
AJ9
SOFTWARE
ASN I:104 , HIS I:108 , TYR I:411
binding site for residue 1PE I 1007
26
AK1
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , PHE J:398 , ASN J:457 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ALA J:577 , ZN J:1002 , ZN J:1003 , CO3 J:1004 , HOH J:1108
binding site for residue 4TY J 1001
27
AK2
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , 4TY J:1001 , ZN J:1003
binding site for residue ZN J 1002
28
AK3
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , 4TY J:1001 , ZN J:1002
binding site for residue ZN J 1003
29
AK4
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , 4TY J:1001
binding site for residue CO3 J 1004
30
AK5
SOFTWARE
GLU J:316 , GLN J:319 , LYS J:320 , SO4 J:1008
binding site for residue 1PE J 1005
31
AK6
SOFTWARE
TYR J:103 , HIS J:108 , PHE J:289 , LYS J:320 , TYR J:411
binding site for residue 1PE J 1006
32
AK7
SOFTWARE
PHE G:156 , ASN G:161 , TYR J:176 , MET J:177 , PHE J:178 , SER J:184
binding site for residue SO4 J 1007
33
AK8
SOFTWARE
ILE J:101 , TYR J:103 , ASN J:104 , 1PE J:1005
binding site for residue SO4 J 1008
34
AK9
SOFTWARE
GLY J:390 , SER J:391 , MET J:392
binding site for residue SO4 J 1009
35
AL1
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , ASN K:457 , ASP K:459 , GLU K:461 , ARG K:463 , LEU K:487 , GLY K:489 , ZN K:1002 , ZN K:1003 , CO3 K:1004 , HOH K:1145
binding site for residue 4TY K 1001
36
AL2
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , 4TY K:1001 , ZN K:1003
binding site for residue ZN K 1002
37
AL3
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , 4TY K:1001 , ZN K:1002
binding site for residue ZN K 1003
38
AL4
SOFTWARE
LYS K:374 , ALA K:460 , GLY K:462 , ARG K:463 , LEU K:487 , 4TY K:1001
binding site for residue CO3 K 1004
39
AL5
SOFTWARE
TYR K:103 , GLU K:316 , LYS K:320 , SO4 K:1008
binding site for residue 1PE K 1005
40
AL6
SOFTWARE
TYR K:103 , HIS K:108 , LYS K:320 , TYR K:411
binding site for residue 1PE K 1006
41
AL7
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 K 1007
42
AL8
SOFTWARE
TYR K:103 , ASN K:104 , 1PE K:1005
binding site for residue SO4 K 1008
43
AL9
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , PHE L:398 , ASN L:457 , ASP L:459 , GLU L:461 , LEU L:487 , GLY L:489 , ZN L:1002 , ZN L:1003 , CO3 L:1004 , HOH L:1155 , HOH L:1162
binding site for residue 4TY L 1001
44
AM1
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , 4TY L:1001 , ZN L:1003 , HOH L:1162
binding site for residue ZN L 1002
45
AM2
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , 4TY L:1001 , ZN L:1002
binding site for residue ZN L 1003
46
AM3
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , 4TY L:1001
binding site for residue CO3 L 1004
47
AM4
SOFTWARE
TYR L:103 , ASN L:104 , HIS L:108 , TYR L:411
binding site for residue 1PE L 1005
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(0, 0)
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