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4ZTT
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (772 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF FERRITIN MUTANTS REVEAL DIFERRIC-PEROXO INTERMEDIATES
Authors
:
S. Kim, Y. H. Park, S. W. Jung, J. H. Seok, Y. B. Chung, D. B. Lee, G. Gowda, J H. R. Han, A. E. Cho, C. Lee, M. S. Chung, K. H. Kim
Date
:
15 May 15 (Deposition) - 15 Jun 16 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.83
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Helicobactor Pylori, Escherichia Coli, Gram-Negative Bacteria, Ferritin, Iron Uptake, Ferroxidase Center, Reaction Intermediate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kim, J. H. Lee, J. H. Seok, Y. H. Park, S. W. Jung, A. E. Cho, C. Lee, M. S. Chung, K. H. Kim
Structural Basis Of Novel Iron-Uptake Route And Reaction Intermediates In Ferritins From Gram-Negative Bacteria.
J. Mol. Biol. V. 428 5007 2016
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Hetero Components
(8, 37)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
3a: MU-OXO-DIIRON (FEOa)
3b: MU-OXO-DIIRON (FEOb)
3c: MU-OXO-DIIRON (FEOc)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
6a: HYDROXIDE ION (OHa)
6b: HYDROXIDE ION (OHb)
6c: HYDROXIDE ION (OHc)
6d: HYDROXIDE ION (OHd)
6e: HYDROXIDE ION (OHe)
6f: HYDROXIDE ION (OHf)
6g: HYDROXIDE ION (OHg)
6h: HYDROXIDE ION (OHh)
6i: HYDROXIDE ION (OHi)
7a: OXYGEN MOLECULE (OXYa)
5a: OXYGEN ATOM (Oa)
5b: OXYGEN ATOM (Ob)
8a: PEROXIDE ION (PERa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
2
FE
5
Ligand/Ion
FE (III) ION
1
FE2
2
Ligand/Ion
FE (II) ION
3
FEO
3
Ligand/Ion
MU-OXO-DIIRON
4
GOL
14
Ligand/Ion
GLYCEROL
5
O
2
Ligand/Ion
OXYGEN ATOM
6
OH
9
Ligand/Ion
HYDROXIDE ION
7
OXY
1
Ligand/Ion
OXYGEN MOLECULE
8
PER
1
Ligand/Ion
PEROXIDE ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:17 , GLU A:50 , HIS A:53 , GLU A:94 , GLN A:127 , GLU A:130 , OH A:202 , OH A:203 , HOH A:301
binding site for residue FEO A 201
02
AC2
SOFTWARE
GLU A:17 , HIS A:53 , TYR A:123 , GLN A:127 , FEO A:201 , OH A:203
binding site for residue OH A 202
03
AC3
SOFTWARE
GLU A:17 , GLU A:50 , ILE A:97 , FEO A:201 , OH A:202
binding site for residue OH A 203
04
AC4
SOFTWARE
ASN A:15 , TYR A:19 , VAL A:73 , GLU A:74 , HOH A:305 , HOH A:309 , HOH A:339
binding site for residue GOL A 204
05
AC5
SOFTWARE
GLN A:99 , ASN A:102 , HIS A:106 , HOH A:303 , GLN C:112
binding site for residue GOL A 205
06
AC6
SOFTWARE
GLU B:17 , GLU B:50 , HIS B:53 , GLU B:94 , GLN B:127 , GLU B:130 , OH B:202 , OH B:203 , HOH B:301
binding site for residue FEO B 201
07
AC7
SOFTWARE
GLU B:17 , HIS B:53 , TYR B:123 , GLN B:127 , FEO B:201 , OH B:203
binding site for residue OH B 202
08
AC8
SOFTWARE
GLU B:17 , GLU B:50 , ILE B:97 , FEO B:201 , OH B:202
binding site for residue OH B 203
09
AC9
SOFTWARE
SER B:21 , LEU B:22 , GLN B:25 , ALA B:47 , GLN B:48 , HOH B:327 , HOH B:354 , MET E:54 , GLN E:55
binding site for residue GOL B 204
10
AD1
SOFTWARE
LEU B:2 , ASP B:113 , PRO B:115 , HOH B:392 , HOH B:412 , THR E:98 , ASN E:102
binding site for residue GOL B 205
11
AD2
SOFTWARE
GLU C:17 , GLU C:50 , HIS C:53 , FE2 C:202 , OXY C:203 , OH C:204 , HOH C:301
binding site for residue FE C 201
12
AD3
SOFTWARE
GLU C:50 , GLU C:94 , GLU C:130 , FE C:201 , OXY C:203 , HOH C:301
binding site for residue FE2 C 202
13
AD4
SOFTWARE
GLU C:17 , GLU C:50 , HIS C:53 , GLU C:94 , ILE C:97 , GLN C:127 , GLU C:130 , FE C:201 , FE2 C:202 , OH C:204 , HOH C:301
binding site for residue OXY C 203
14
AD5
SOFTWARE
GLU C:17 , HIS C:53 , TYR C:123 , GLN C:127 , FE C:201 , OXY C:203
binding site for residue OH C 204
15
AD6
SOFTWARE
SER C:21 , LEU C:22 , GLN C:25 , ALA C:47 , GLN C:48 , MET C:51 , HOH C:323 , MET D:51 , MET D:54 , GLN D:55
binding site for residue GOL C 205
16
AD7
SOFTWARE
ILE C:7 , GLU C:8 , ASN C:11 , LEU C:67
binding site for residue GOL C 206
17
AD8
SOFTWARE
SER B:136 , ASP B:139 , LYS B:140 , HOH B:314 , THR C:35 , HOH C:306
binding site for residue GOL C 207
18
AD9
SOFTWARE
ALA C:41 , ARG C:44 , ARG C:45 , HOH C:304 , HOH C:318 , HOH C:328
binding site for residue GOL C 208
19
AE1
SOFTWARE
ARG C:69 , ASN C:71 , THR C:72 , HOH C:376 , HOH D:371
binding site for residue GOL C 209
20
AE2
SOFTWARE
GLU D:17 , GLU D:50 , HIS D:53 , FE D:202 , PER D:203 , OH D:204 , HOH D:301
binding site for residue FE D 201
21
AE3
SOFTWARE
GLU D:50 , GLU D:94 , GLU D:130 , FE D:201 , PER D:203
binding site for residue FE D 202
22
AE4
SOFTWARE
GLU D:17 , GLU D:50 , HIS D:53 , GLU D:94 , ILE D:97 , GLN D:127 , GLU D:130 , FE D:201 , FE D:202 , OH D:204 , HOH D:301
binding site for residue PER D 203
23
AE5
SOFTWARE
GLU D:17 , HIS D:53 , TYR D:123 , GLN D:127 , FE D:201 , PER D:203 , HOH D:301
binding site for residue OH D 204
24
AE6
SOFTWARE
GLN D:99 , HIS D:106 , HOH D:375 , GLN E:112
binding site for residue GOL D 205
25
AE7
SOFTWARE
LYS A:146 , HOH A:308 , GLY D:148 , GLU D:149 , HOH D:362
binding site for residue GOL D 206
26
AE8
SOFTWARE
GLU E:17 , GLU E:50 , HIS E:53 , GLU E:94 , GLN E:127 , GLU E:130 , OH E:202 , HOH E:301 , HOH E:303
binding site for residue FEO E 201
27
AE9
SOFTWARE
GLU E:17 , HIS E:53 , TYR E:123 , GLN E:127 , FEO E:201 , HOH E:301
binding site for residue OH E 202
28
AF1
SOFTWARE
ILE E:7 , GLU E:8 , ASN E:11 , LEU E:67 , ARG E:69 , HOH E:306 , HOH E:309 , HOH E:369
binding site for residue GOL E 203
29
AF2
SOFTWARE
GLN A:112 , SER B:75 , ARG E:69 , ASN E:71 , THR E:72
binding site for residue GOL E 204
30
AF3
SOFTWARE
GLU E:149
binding site for residue FE2 E 205
31
AF4
SOFTWARE
GLU F:50 , GLU F:94 , GLU F:130 , FE F:202 , O F:203 , O F:204 , HOH F:301
binding site for residue FE F 201
32
AF5
SOFTWARE
GLU F:17 , GLU F:50 , HIS F:53 , FE F:201 , O F:203 , O F:204 , OH F:205 , OH F:206
binding site for residue FE F 202
33
AF6
SOFTWARE
GLU F:17 , GLU F:50 , HIS F:53 , GLU F:94 , GLN F:127 , GLU F:130 , FE F:201 , FE F:202 , O F:204 , OH F:205 , OH F:206 , HOH F:301
binding site for residue O F 203
34
AF7
SOFTWARE
GLU F:17 , HIS F:53 , TYR F:123 , GLN F:127 , FE F:202 , O F:203 , O F:204 , OH F:206
binding site for residue OH F 205
35
AF8
SOFTWARE
GLU F:17 , ALA F:20 , GLU F:50 , ILE F:97 , FE F:202 , O F:203 , OH F:205
binding site for residue OH F 206
36
AF9
SOFTWARE
MET A:54 , GLN A:55 , SER F:21 , LEU F:22 , GLN F:25 , ALA F:47 , GLN F:48 , HOH F:346
binding site for residue GOL F 207
37
AG1
SOFTWARE
GLU F:94 , ILE F:97 , THR F:98 , TYR F:123 , VAL F:124 , SER F:125 , GLU F:126 , HIS F:128 , GLU F:129 , GLU F:130 , GLU F:131 , FE F:201 , FE F:202 , O F:203 , OH F:205
binding site for Di-peptide O F 204 and GLN F 127
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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)
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