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Asym. Unit
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Asym.Unit (476 KB)
Biol.Unit 1 (464 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
Y. Kim, M. Makowska-Grzyska, M. Gu, M. Kavitha, L. Hedstrom, W. F. Ander A. Joachimiak, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
11 May 15 (Deposition) - 17 Jun 15 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Impdh, Delta Cbs, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Makowska-Grzyska, Y. Kim, S. K. Gorla, Y. Wei, K. Mandapati, M. Zhang, N. Maltseva, G. Modi, H. I. Boshoff, M. Gu, C. Aldrich, G. D. Cuny, L. Hedstrom, A. Joachimiak
Mycobacterium Tuberculosis Impdh In Complexes With Substrates, Products And Antitubercular Compounds.
Plos One V. 10 38976 2015
[
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Hetero Components
(4, 34)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: S-1,2-PROPANEDIOL (PGOa)
3b: S-1,2-PROPANEDIOL (PGOb)
3c: S-1,2-PROPANEDIOL (PGOc)
3d: S-1,2-PROPANEDIOL (PGOd)
3e: S-1,2-PROPANEDIOL (PGOe)
3f: S-1,2-PROPANEDIOL (PGOf)
3g: S-1,2-PROPANEDIOL (PGOg)
3h: S-1,2-PROPANEDIOL (PGOh)
3i: S-1,2-PROPANEDIOL (PGOi)
3j: S-1,2-PROPANEDIOL (PGOj)
3k: S-1,2-PROPANEDIOL (PGOk)
3l: S-1,2-PROPANEDIOL (PGOl)
3m: S-1,2-PROPANEDIOL (PGOm)
3n: S-1,2-PROPANEDIOL (PGOn)
3o: S-1,2-PROPANEDIOL (PGOo)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
2
K
4
Ligand/Ion
POTASSIUM ION
3
PGO
15
Ligand/Ion
S-1,2-PROPANEDIOL
4
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:338 , SER A:339 , GLY A:376 , GLY A:397 , SER A:398 , TYR A:421 , HOH A:720 , HOH A:722 , HOH A:741 , HOH A:758
binding site for residue PO4 A 601
02
AC2
SOFTWARE
PRO A:61 , ALA A:483 , GLY A:486 , TYR A:487 , GLU D:458 , PGO D:604
binding site for residue PGO A 602
03
AC3
SOFTWARE
ALA A:285 , HIS A:286 , ASN A:289 , ASP A:453 , HOH A:753 , HOH A:827 , PGO C:603
binding site for residue PGO A 603
04
AC4
SOFTWARE
ARG A:482 , PGO A:605 , MET C:271 , ASP C:274
binding site for residue PGO A 604
05
AC5
SOFTWARE
THR A:63 , ALA A:64 , ARG A:482 , PGO A:604 , HOH A:764 , TRP C:266
binding site for residue PGO A 605
06
AC6
SOFTWARE
GLN A:378 , LEU A:399 , GLN A:476 , TYR A:527 , HOH A:808
binding site for residue GOL A 606
07
AC7
SOFTWARE
ASP A:48 , ASP A:49 , ILE A:504 , THR A:505 , PRO A:506 , LEU A:509 , THR C:505 , PRO C:506 , ALA C:507
binding site for residue GOL A 607
08
AC8
SOFTWARE
ASP A:48 , GLN A:378 , TYR A:379 , ASP A:382 , HOH A:771 , LYS C:510 , HIS C:515 , ASP C:516
binding site for residue GOL A 608
09
AC9
SOFTWARE
GLU A:511 , SER A:512 , HIS A:513 , GLY D:336 , GLY D:338 , CYS D:341
binding site for residue K A 609
10
AD1
SOFTWARE
PRO A:506 , HOH A:703 , PRO B:506 , PRO C:506 , PRO D:506 , PGO D:601
binding site for residue GOL A 610
11
AD2
SOFTWARE
GLY A:336 , GLY A:338 , CYS A:341 , GLU C:511 , SER C:512 , HIS C:513
binding site for residue K A 611
12
AD3
SOFTWARE
GLY B:338 , SER B:339 , GLY B:375 , GLY B:376 , GLY B:397 , SER B:398 , TYR B:421 , HOH B:728 , HOH B:733 , HOH B:738 , HOH B:771
binding site for residue PO4 B 601
13
AD4
SOFTWARE
PRO B:61 , ALA B:483 , GLY B:486 , TYR B:487 , GLU C:458 , GOL C:604 , HOH C:739
binding site for residue PGO B 602
14
AD5
SOFTWARE
ALA B:285 , HIS B:286 , ASN B:289 , HOH B:735
binding site for residue PGO B 603
15
AD6
SOFTWARE
GLN B:378 , TYR B:379 , LEU B:399 , TYR B:527 , HOH B:709 , HOH B:838
binding site for residue GOL B 604
16
AD7
SOFTWARE
GLU B:511 , SER B:512 , HIS B:513 , GLY C:336 , GLY C:338 , CYS C:341
binding site for residue K B 605
17
AD8
SOFTWARE
GLU B:458 , PRO D:61 , ALA D:483 , GLY D:486 , TYR D:487
binding site for residue PGO B 606
18
AD9
SOFTWARE
ASP B:49 , THR B:505 , PRO B:506 , HOH B:874 , THR D:505 , PRO D:506 , ALA D:507
binding site for residue PGO B 607
19
AE1
SOFTWARE
ASP B:48 , GLN B:378 , TYR B:379 , ASP B:382 , HOH B:820 , LYS D:510 , HIS D:515 , ASP D:516
binding site for residue GOL B 608
20
AE2
SOFTWARE
GLY B:336 , GLY B:338 , CYS B:341 , GLU D:511 , SER D:512 , HIS D:513
binding site for residue K B 609
21
AE3
SOFTWARE
THR B:505 , PRO B:506 , ALA B:507 , ASP C:48 , ASP C:49 , PRO C:506 , HOH C:822
binding site for residue PGO C 601
22
AE4
SOFTWARE
GLY C:338 , SER C:339 , GLY C:376 , GLY C:397 , SER C:398 , TYR C:421 , HOH C:735 , HOH C:737 , HOH C:738 , HOH C:764
binding site for residue PO4 C 602
23
AE5
SOFTWARE
GLU A:458 , PGO A:603 , HOH A:717 , ALA C:483 , GLY C:486 , TYR C:487
binding site for residue PGO C 603
24
AE6
SOFTWARE
PGO B:602 , ALA C:285 , HIS C:286 , ASN C:289 , HOH C:741 , HOH C:814
binding site for residue GOL C 604
25
AE7
SOFTWARE
ASP C:65 , SER C:67 , ARG C:75 , HOH C:729
binding site for residue GOL C 605
26
AE8
SOFTWARE
LYS B:510 , HIS B:515 , ASP B:516 , ASP C:48 , GLN C:378 , TYR C:379 , ASP C:382 , HOH C:794
binding site for residue GOL C 606
27
AE9
SOFTWARE
GLN C:378 , TYR C:379 , LEU C:399 , TYR C:527 , HOH C:702 , HOH C:833
binding site for residue PGO C 607
28
AF1
SOFTWARE
THR A:505 , PRO A:506 , ALA A:507 , GOL A:610 , ASP D:48 , ASP D:49 , THR D:505 , PRO D:506 , LEU D:509 , HOH D:710
binding site for residue PGO D 601
29
AF2
SOFTWARE
LYS A:510 , HIS A:515 , ASP A:516 , ASP D:48 , GLN D:378 , TYR D:379 , ASP D:382 , HOH D:826
binding site for residue GOL D 602
30
AF3
SOFTWARE
GLY D:338 , SER D:339 , GLY D:375 , GLY D:376 , GLY D:397 , SER D:398 , TYR D:421 , HOH D:718 , HOH D:723 , HOH D:734 , HOH D:774
binding site for residue PO4 D 603
31
AF4
SOFTWARE
PGO A:602 , HOH A:802 , ALA D:285 , HIS D:286 , ASN D:289 , ASP D:453 , HOH D:827
binding site for residue PGO D 604
32
AF5
SOFTWARE
MET A:271 , ASP A:274 , PGO D:606
binding site for residue PGO D 605
33
AF6
SOFTWARE
TRP A:266 , THR D:63 , ALA D:64 , ARG D:482 , PGO D:605 , HOH D:837
binding site for residue PGO D 606
34
AF7
SOFTWARE
GLN D:378 , TYR D:379 , LEU D:399 , TYR D:527 , HOH D:703 , HOH D:745
binding site for residue GOL D 607
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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