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4ZOD
Asym. Unit
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Asym.Unit (486 KB)
Biol.Unit 1 (480 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GLUCOSE
Authors
:
M. Nakajima, R. Yoshida, A. Miyanaga, K. Abe, Y. Takahashi, N. Sugimoto H. Toyoizumi, H. Nakai, M. Kitaoka, H. Taguchi
Date
:
06 May 15 (Deposition) - 18 May 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Tim Barrel, Hydrolase, Beta-1, 2-Glucan Degradation, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nakajima, R. Yoshida, A. Miyanaga, K. Abe, Y. Takahashi, N. Sugimoto, H. Toyoizumi, H. Nakai, M. Kitaoka, H. Taguchi
Functional And Structural Analysis Of A Beta-Glucosidase Involved In Beta-1, 2-Glucan Metabolism In Listeria Innocua
Plos One V. 11 48870 2016
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
3
Ligand/Ion
BETA-D-GLUCOSE
2
GOL
7
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:91 , PHE A:135 , ARG A:149 , LYS A:191 , HIS A:192 , MET A:235 , PHE A:238 , ASP A:270 , GLU A:473 , GOL A:803
binding site for residue BGC A 801
02
AC2
SOFTWARE
ASP A:648 , THR A:650 , HOH A:956 , HOH A:989 , HOH A:994 , HOH A:1072
binding site for residue MG A 802
03
AC3
SOFTWARE
TRP A:271 , GLU A:473 , BGC A:801 , HOH A:976 , ARG B:572
binding site for residue GOL A 803
04
AC4
SOFTWARE
ARG A:143 , GLU A:214 , ASN A:218 , TYR A:564 , ASN A:566 , LEU A:568 , HOH A:906 , HOH A:957 , HOH A:1008 , THR B:207
binding site for residue GOL A 804
05
AC5
SOFTWARE
GLU A:438 , TYR A:439 , THR A:440 , LYS A:467
binding site for residue GOL A 805
06
AC6
SOFTWARE
TRP A:470 , ARG A:481 , LEU A:482 , PRO A:483 , HOH B:960
binding site for residue PEG A 806
07
AC7
SOFTWARE
SER A:211 , THR A:212 , HOH A:932 , THR B:212 , HOH B:928
binding site for residue SO4 A 807
08
AC8
SOFTWARE
ARG A:572 , TYR A:583 , HOH A:903 , HOH A:905 , TRP B:271 , GLU B:473 , BGC B:802
binding site for residue GOL A 808
09
AC9
SOFTWARE
THR A:212 , ASN A:249 , TRP A:251 , HIS B:690 , HOH B:911 , HOH B:970 , HOH B:1071
binding site for residue PEG B 801
10
AD1
SOFTWARE
GOL A:808 , ASP B:91 , PHE B:135 , ARG B:149 , LYS B:191 , HIS B:192 , MET B:235 , PHE B:238 , ASP B:270 , GLU B:473
binding site for residue BGC B 802
11
AD2
SOFTWARE
HIS A:690 , THR B:212 , ASP B:242 , ILE B:244 , ASN B:249 , TRP B:251 , HOH B:948 , HOH B:984
binding site for residue BGC B 803
12
AD3
SOFTWARE
ASP B:648 , THR B:650 , HOH B:947 , HOH B:990 , HOH B:1028 , HOH B:1091
binding site for residue MG B 804
13
AD4
SOFTWARE
THR A:207 , ASN A:209 , ARG B:143 , GLU B:214 , ASN B:218 , TYR B:564 , ASN B:566 , LEU B:568 , HOH B:909 , HOH B:1072
binding site for residue GOL B 805
14
AD5
SOFTWARE
LEU B:220 , GLU B:260 , MET B:261 , HOH B:983
binding site for residue GOL B 806
15
AD6
SOFTWARE
GLU B:438 , TYR B:439 , THR B:440 , LYS B:467
binding site for residue GOL B 807
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (486 KB)
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