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4ZOB
Asym. Unit
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Asym.Unit (484 KB)
Biol.Unit 1 (478 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GLUCONOLACTONE
Authors
:
M. Nakajima, R. Yoshida, A. Miyanaga, K. Abe, Y. Takahashi, N. Sugimoto H. Toyoizumi, H. Nakai, M. Kitaoka, H. Taguchi
Date
:
06 May 15 (Deposition) - 18 May 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Tim Barrel, Hydrolase, Beta-1, 2-Glucan Degradation, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nakajima, R. Yoshida, A. Miyanaga, K. Abe, Y. Takahashi, N. Sugimoto, H. Toyoizumi, H. Nakai, M. Kitaoka, H. Taguchi
Functional And Structural Analysis Of A Beta-Glucosidase Involved In Beta-1, 2-Glucan Metabolism In Listeria Innocua
Plos One V. 11 48870 2016
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(... (LGCa)
2b: (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(... (LGCb)
2c: (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(... (LGCc)
2d: (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(... (LGCd)
2e: (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(... (LGCe)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
LGC
5
Ligand/Ion
(3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:91 , ARG A:149 , LYS A:191 , HIS A:192 , MET A:235 , PHE A:238 , ASP A:270 , TRP A:409 , GLU A:473 , GOL A:804
binding site for residue LGC A 801
02
AC2
SOFTWARE
THR A:212 , ASP A:242 , ASN A:249 , HOH A:922 , HIS B:690
binding site for residue LGC A 802
03
AC3
SOFTWARE
ASP A:648 , THR A:650 , HOH A:928 , HOH A:955 , HOH A:1017
binding site for residue MG A 803
04
AC4
SOFTWARE
TRP A:271 , GLU A:473 , LGC A:801 , HOH A:906 , ARG B:572 , TYR B:583
binding site for residue GOL A 804
05
AC5
SOFTWARE
GLU A:438 , TYR A:439 , THR A:440 , LYS A:467
binding site for residue GOL A 805
06
AC6
SOFTWARE
ARG A:572 , TRP B:271 , GLU B:473 , LGC B:802 , HOH B:905
binding site for residue GOL A 806
07
AC7
SOFTWARE
THR A:207 , GLY A:243 , ARG B:143 , ARG B:213 , GLU B:214 , ASN B:218 , ASN B:566 , HOH B:907 , HOH B:979
binding site for residue PEG B 801
08
AC8
SOFTWARE
GOL A:806 , LEU B:61 , ASP B:91 , PHE B:135 , ARG B:149 , LYS B:191 , HIS B:192 , MET B:235 , PHE B:238 , ASP B:270 , GLU B:473
binding site for residue LGC B 802
09
AC9
SOFTWARE
HIS A:690 , THR B:212 , ASP B:242 , ASN B:249 , TRP B:251 , SO4 B:808 , HOH B:980 , HOH B:983
binding site for residue LGC B 803
10
AD1
SOFTWARE
TYR A:583 , GLY B:408 , TRP B:409 , ASN B:410 , ASN B:468 , GLY B:472 , GLU B:473 , HOH B:905
binding site for residue LGC B 804
11
AD2
SOFTWARE
ASP B:648 , THR B:650 , HOH B:942 , HOH B:966 , HOH B:969 , HOH B:994
binding site for residue MG B 805
12
AD3
SOFTWARE
TRP B:470 , LEU B:477 , ARG B:481
binding site for residue GOL B 806
13
AD4
SOFTWARE
PRO B:158 , GLN B:217 , ASN B:218 , GLU B:659 , LYS B:661 , HOH B:931
binding site for residue GOL B 807
14
AD5
SOFTWARE
SER A:211 , THR A:212 , HOH A:909 , SER B:211 , THR B:212 , LGC B:803 , HOH B:903
binding site for residue SO4 B 808
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (484 KB)
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