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4ZNR
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DLN1 COMPLEXED WITH MAN(ALPHA1-3)MAN
Authors
:
N. Jia, Y. L. Jiang, W. Cheng, H. W. Wang, C. Z. Zhou, Y. Chen
Date
:
05 May 15 (Deposition) - 20 Jan 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Pore-Forming Protein, Aeolysin-Like Protein, Vetebrate, High-Mannose Glycans, Complex, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Jia, N. Liu, W. Cheng, Y. L. Jiang, H. Sun, L. L. Chen, J. Peng, Y. Zhang Y. H. Ding, Z. H. Zhang, X. Wang, G. Cai, J. Wang, M. Q. Dong, Z. Zhang, H. Wu, H. W. Wang, Y. Chen, C. Z. Zhou
Structural Basis For Receptor Recognition And Pore Formatio Of A Zebrafish Aerolysin-Like Protein.
Embo Rep. V. 17 235 2016
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Hetero Components
(8, 23)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
7a: TETRAETHYLENE GLYCOL (PG4a)
7b: TETRAETHYLENE GLYCOL (PG4b)
7c: TETRAETHYLENE GLYCOL (PG4c)
8a: TRIETHYLENE GLYCOL (PGEa)
8b: TRIETHYLENE GLYCOL (PGEb)
8c: TRIETHYLENE GLYCOL (PGEc)
8d: TRIETHYLENE GLYCOL (PGEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
8
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:81 , GLY A:83 , GLY A:85
binding site for residue CL A 403
02
AC2
SOFTWARE
THR A:5 , ASN A:6 , LEU A:7 , HOH A:501 , HOH A:560
binding site for residue PEG A 404
03
AC3
SOFTWARE
ASN A:25 , GLY A:26 , ASP A:50 , THR A:202 , TYR A:292 , HOH A:529
binding site for residue PEG A 405
04
AC4
SOFTWARE
HIS A:104 , MET A:105 , THR A:106 , TRP A:108 , HOH A:510 , HOH A:605 , EPE B:404
binding site for residue PGE A 406
05
AC5
SOFTWARE
LYS A:97 , HOH A:520 , GLU B:168 , LYS B:191
binding site for residue PGE A 407
06
AC6
SOFTWARE
GLU A:30 , LYS A:31 , TRP A:47 , VAL A:67 , HOH A:622 , VAL B:67
binding site for residue PG4 A 408
07
AC7
SOFTWARE
LYS A:92 , LYS A:94 , GLU A:100 , PHE A:102 , GLU A:113
binding site for residue PG4 A 409
08
AC8
SOFTWARE
SER A:17
binding site for residue EDO A 410
09
AC9
SOFTWARE
GLY B:81 , ASN B:82 , GLY B:83 , GLY B:85
binding site for residue CL B 403
10
AD1
SOFTWARE
SER A:107 , GLY A:109 , PGE A:406 , TRP B:39 , THR B:86 , TRP B:108 , HOH B:503
binding site for residue EPE B 404
11
AD2
SOFTWARE
LYS B:307 , ASN B:309
binding site for residue EDO B 405
12
AD3
SOFTWARE
VAL B:127 , GLY B:128
binding site for residue EDO B 406
13
AD4
SOFTWARE
THR B:5 , ASN B:6 , LEU B:7 , HOH B:617
binding site for residue PEG B 407
14
AD5
SOFTWARE
GLY A:38 , TRP A:39 , SER A:107 , GLY B:109
binding site for residue PEG B 408
15
AD6
SOFTWARE
SER B:147 , LYS B:182 , GLU B:212 , THR B:236 , HOH B:502
binding site for residue PEG B 409
16
AD7
SOFTWARE
GLU B:30 , LYS B:31 , TRP B:47 , HOH B:516
binding site for residue PGE B 410
17
AD8
SOFTWARE
HIS B:104 , MET B:105 , THR B:106 , SER B:107 , TRP B:108 , LEU B:110 , HOH B:519
binding site for residue PGE B 411
18
AD9
SOFTWARE
LYS B:92 , LYS B:94 , GLU B:100 , PHE B:102 , GLU B:113
binding site for residue PG4 B 412
19
AE1
SOFTWARE
GLU A:168 , GLY B:71 , ASN B:96 , LYS B:97 , HOH B:501
binding site for residue 1PE B 413
20
AE2
SOFTWARE
GLY A:15 , ARG A:87 , GLY A:131 , SER A:132 , ASP A:133 , ASP A:135 , HOH A:502 , MAN B:401
binding site for Poly-Saccharide residues MAN A 401 through MAN A 402
21
AE3
SOFTWARE
MAN A:401 , GLY B:14 , GLY B:15 , ARG B:87 , GLY B:131 , SER B:132 , ASP B:133 , ASP B:135 , HOH B:654
binding site for Poly-Saccharide residues MAN B 401 through MAN B 402
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (118 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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