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4ZM9
Asym. Unit
Info
Asym.Unit (188 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CIRCULARLY PERMUTED HUMAN ASPARAGINASE-LIKE PROTEIN 1
Authors
:
W. Z. Li, Y. Zhang
Date
:
02 May 15 (Deposition) - 17 Feb 16 (Release) - 24 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Circularly Permutated, Human Asparaginase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Li, S. Irani, A. Crutchfield, K. Hodge, W. Matthews, P. Patel, Y. J. Zhang, E. Stone
Intramolecular Cleavage Of The Hasrgl1 Homodimer Occurs In Two Stages.
Biochemistry V. 55 960 2016
[
close entry info
]
Hetero Components
(5, 25)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
1g: BETA-MERCAPTOETHANOL (BMEg)
1h: BETA-MERCAPTOETHANOL (BMEh)
1i: BETA-MERCAPTOETHANOL (BMEi)
1j: BETA-MERCAPTOETHANOL (BMEj)
2a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
2b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
3a: CITRATE ANION (FLCa)
3b: CITRATE ANION (FLCb)
4a: GLYCINE (GLYa)
4b: GLYCINE (GLYb)
4c: GLYCINE (GLYc)
4d: GLYCINE (GLYd)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
10
Ligand/Ion
BETA-MERCAPTOETHANOL
2
DTT
2
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
3
FLC
2
Ligand/Ion
CITRATE ANION
4
GLY
4
Mod. Amino Acid
GLYCINE
5
NA
7
Ligand/Ion
SODIUM ION
[
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]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:55 , GLU A:56 , ASP A:58 , PHE A:61 , ALA A:63 , CYS A:65
binding site for residue NA A 401
02
AC2
SOFTWARE
THR A:168 , GLY A:188 , ILE A:189 , ARG A:196 , ASP A:199 , SER A:200 , GLY A:220 , GLY A:222 , DTT A:407 , NA A:408 , HOH A:510
binding site for residue GLY A 402
03
AC3
SOFTWARE
GLU A:239 , LEU B:233 , PHE B:236
binding site for residue BME A 403
04
AC4
SOFTWARE
SER A:88 , ALA A:89 , VAL A:108 , MET A:109 , THR A:112 , HIS A:114 , CYS A:115 , LYS B:227
binding site for residue BME A 404
05
AC5
SOFTWARE
BME A:406 , HOH A:519 , GLY B:36 , ARG B:39 , PRO B:308
binding site for residue BME A 405
06
AC6
SOFTWARE
GLY A:26 , ARG A:29 , ALA A:54 , ASP A:58 , BME A:405 , PRO B:308
binding site for residue BME A 406
07
AC7
SOFTWARE
GLY A:11 , THR A:168 , VAL A:190 , THR A:219 , GLY A:220 , GLY A:402
binding site for residue DTT A 407
08
AC8
SOFTWARE
THR A:168 , ASP A:199 , SER A:200 , THR A:218 , GLY A:402
binding site for residue NA A 408
09
AC9
SOFTWARE
LEU B:55 , GLU B:56 , ASP B:58 , PHE B:61 , ALA B:63 , CYS B:65
binding site for residue NA B 401
10
AD1
SOFTWARE
THR B:168 , GLY B:188 , ARG B:196 , ASP B:199 , SER B:200 , GLY B:220 , GLY B:222 , FLC B:403 , HOH B:505 , HOH B:507
binding site for residue GLY B 402
11
AD2
SOFTWARE
GLY B:11 , ASN B:62 , ARG B:147 , THR B:168 , ILE B:189 , THR B:219 , GLY B:220 , GLY B:402
binding site for residue FLC B 403
12
AD3
SOFTWARE
LYS A:227 , SER B:88 , ALA B:89 , VAL B:108 , MET B:109 , THR B:112 , HIS B:114 , CYS B:115
binding site for residue BME B 404
13
AD4
SOFTWARE
LEU C:55 , GLU C:56 , ASP C:58 , PHE C:61 , ALA C:63 , CYS C:65
binding site for residue NA C 401
14
AD5
SOFTWARE
THR C:168 , GLY C:188 , ARG C:196 , ASP C:199 , SER C:200 , GLY C:220 , GLY C:222 , ILE C:225 , NA C:409 , HOH C:506
binding site for residue GLY C 402
15
AD6
SOFTWARE
SER C:88 , ALA C:89 , VAL C:108 , MET C:109 , THR C:112 , HIS C:114 , CYS C:115 , LYS D:227
binding site for residue BME C 403
16
AD7
SOFTWARE
GLY C:36 , HOH C:509 , ALA D:54 , ASP D:57
binding site for residue BME C 404
17
AD8
SOFTWARE
VAL C:33 , GLY C:50 , ALA C:54 , HOH C:513 , THR D:32 , GLY D:36 , BME D:404
binding site for residue BME C 405
18
AD9
SOFTWARE
GLY C:26 , ARG C:29 , ALA C:54 , LEU C:55 , ASP C:58 , PRO D:308 , BME D:404
binding site for residue BME C 406
19
AE1
SOFTWARE
GLY C:11 , ASN C:62 , THR C:168 , THR C:219 , GLY C:220
binding site for residue DTT C 407
20
AE2
SOFTWARE
ASP C:78 , ALA C:94 , LYS C:192 , ARG C:196
binding site for residue NA C 408
21
AE3
SOFTWARE
THR C:168 , ASP C:199 , SER C:200 , THR C:218 , GLY C:402
binding site for residue NA C 409
22
AE4
SOFTWARE
LEU D:55 , GLU D:56 , ASP D:58 , PHE D:61 , ALA D:63 , CYS D:65
binding site for residue NA D 401
23
AE5
SOFTWARE
THR D:168 , GLY D:188 , ILE D:189 , ARG D:196 , ASP D:199 , SER D:200 , GLY D:220 , GLY D:222 , FLC D:403 , HOH D:509 , HOH D:511
binding site for residue GLY D 402
24
AE6
SOFTWARE
GLY D:11 , ASN D:62 , THR D:168 , GLY D:188 , ILE D:189 , THR D:219 , GLY D:220 , GLY D:402
binding site for residue FLC D 403
25
AE7
SOFTWARE
VAL C:53 , ALA C:54 , ASP C:57 , BME C:405 , BME C:406 , PRO D:308
binding site for residue BME D 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (188 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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