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4ZK8
Biol. Unit 1
Info
Asym.Unit (131 KB)
Biol.Unit 1 (362 KB)
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(1)
Title
:
COPPER-CONTAINING NITRITE REDUCTASE FROM THERMOPHILIC BACTERIUM GEOBACILLUS THERMODENITRIFICANS (RE-REFINED)
Authors
:
Y. Fukuda, T. Inoue
Date
:
30 Apr 15 (Deposition) - 20 May 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Copper, Oxidoreductase, Denitrification, Electron Transfer, Nitrite
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Fukuda, K. M. Tse, M. Lintuluoto, Y. Fukunishi, E. Mizohata, H. Matsumura, H. Takami, M. Nojiri, T. Inoue
Structural Insights Into The Function Of A Thermostable Copper-Containing Nitrite Reductase
J. Biochem. V. 155 123 2014
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Hetero Components
(6, 27)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
3i: COPPER (II) ION (CUi)
3j: COPPER (II) ION (CUj)
3k: COPPER (II) ION (CUk)
3l: COPPER (II) ION (CUl)
3m: COPPER (II) ION (CUm)
3n: COPPER (II) ION (CUn)
3o: COPPER (II) ION (CUo)
3p: COPPER (II) ION (CUp)
3q: COPPER (II) ION (CUq)
3r: COPPER (II) ION (CUr)
4a: 1,2-ETHANEDIOL (EDOa)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
7a: SULFATE ION (SO4a)
8a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
MPD
9
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
SO4
3
Ligand/Ion
SULFATE ION
8
TRS
3
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , CYS A:135 , HIS A:143 , MET A:148
binding site for residue CU A 401
02
AC2
SOFTWARE
HIS A:100 , HIS A:134 , HIS A:294 , CL A:419 , HOH A:507
binding site for residue CU A 402
03
AC3
SOFTWARE
HIS A:42 , GLU A:53 , HIS A:83 , HOH A:567 , HOH A:750
binding site for residue CU A 403
04
AC4
SOFTWARE
GLU A:226 , HOH A:646 , HOH A:720 , HOH A:760
binding site for residue CU A 404
05
AC5
SOFTWARE
GLU A:169 , MPD A:421 , ACY A:427 , HOH A:520 , HOH A:732
binding site for residue CU A 405
06
AC6
SOFTWARE
ASP A:40 , GLU A:217 , CU A:417 , HOH A:515 , HOH A:637 , HOH A:757
binding site for residue CU A 406
07
AC7
SOFTWARE
ASP A:251 , CU A:408 , HOH A:508 , HOH A:516
binding site for residue CU A 407
08
AC8
SOFTWARE
ASP A:251 , CU A:407 , HOH A:508 , HOH A:516 , HOH A:535
binding site for residue CU A 408
09
AC9
SOFTWARE
ASP A:55 , HOH A:510 , HOH A:523 , HOH A:526 , HOH A:673 , HOH A:786
binding site for residue CU A 409
10
AD1
SOFTWARE
HIS A:39 , HOH A:719 , HOH A:769
binding site for residue CU A 410
11
AD2
SOFTWARE
GLU A:165 , ASP A:167 , HOH A:511 , HOH A:541 , HOH A:627 , HOH A:653 , HOH A:801
binding site for residue CU A 411
12
AD3
SOFTWARE
LYS A:127 , ASP A:251 , THR A:282
binding site for residue CU A 412
13
AD4
SOFTWARE
PRO A:191 , GLU A:239 , ASN A:297 , HIS A:298 , CU A:418 , HOH A:501 , HOH A:549 , HOH A:663 , HOH A:739 , HOH A:815
binding site for residue CU A 413
14
AD5
SOFTWARE
ASP A:182 , HOH A:662 , HOH A:701 , HOH A:770
binding site for residue CU A 414
15
AD6
SOFTWARE
HIS A:262 , HOH A:797
binding site for residue CU A 415
16
AD7
SOFTWARE
GLU A:78 , HOH A:504 , HOH A:583 , HOH A:736 , HOH A:746
binding site for residue CU A 416
17
AD8
SOFTWARE
GLU A:217 , CU A:406 , HOH A:515 , HOH A:637 , HOH A:757
binding site for residue CU A 417
18
AD9
SOFTWARE
GLU A:239 , CU A:413 , HOH A:501 , HOH A:549 , HOH A:560 , HOH A:658 , HOH A:739 , HOH A:815 , HOH A:853
binding site for residue CU A 418
19
AE1
SOFTWARE
HIS A:134 , HIS A:244 , VAL A:246 , HIS A:294 , CU A:402 , HOH A:507 , HOH A:802
binding site for residue CL A 419
20
AE2
SOFTWARE
LYS A:157
binding site for residue CL A 420
21
AE3
SOFTWARE
ASP A:167 , ARG A:168 , GLU A:169 , CU A:405 , HOH A:520 , HOH A:528
binding site for residue MPD A 421
22
AE4
SOFTWARE
ARG A:285 , HOH A:566 , HOH A:585 , HOH A:846 , HOH A:875
binding site for residue MPD A 422
23
AE5
SOFTWARE
LYS A:22 , GLY A:23 , ASP A:51 , LYS A:61 , HOH A:665 , HOH A:731
binding site for residue MPD A 423
24
AE6
SOFTWARE
LYS A:32 , MET A:33 , GLU A:34 , HIS A:42 , GLU A:44 , HOH A:578 , HOH A:796
binding site for residue PEG A 424
25
AE7
SOFTWARE
LYS A:216 , PRO A:219 , MET A:306 , HOH A:867
binding site for residue EDO A 425
26
AE8
SOFTWARE
HIS A:262 , LEU A:263
binding site for residue SO4 A 426
27
AE9
SOFTWARE
GLU A:169 , LEU A:201 , TYR A:231 , CU A:405 , HOH A:520 , HOH A:732
binding site for residue ACY A 427
28
AF1
SOFTWARE
ARG A:168
binding site for residue ACY A 428
29
AF2
SOFTWARE
SER A:107 , GLY A:287 , THR A:288 , LYS A:308 , HOH A:527
binding site for residue TRS A 429
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(0, 0)
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Exons
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SCOP Domains
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Asym.Unit (131 KB)
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Biol.Unit 1 (362 KB)
Header - Biol.Unit 1
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