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4ZIB
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF PYLRS MUTANT BOUND WITH 3-BENZOTHIENYL-L-ALANINE AND ATP
Authors
:
A. Nakamura, L. T. Guo, Y. S. Wang, D. Soll
Date
:
28 Apr 15 (Deposition) - 02 Mar 16 (Release) - 02 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Aminoacyl-Trna Synthetases, Archaeal Proteins, Evolution, Molecular, Genetic Code, Substrate Specificity, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Englert, A. Nakamura, Y. S. Wang, D. Eiler, D. Soll, L. T. Guo
Probing The Active Site Tryptophan Of Staphylococcus Aureus Thioredoxin With An Analog.
Nucleic Acids Res. V. 43 11061 2015
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: 3-(1-BENZOTHIOPHEN-3-YL)-L-ALANINE (4OGa)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
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No.
Name
Count
Type
Full Name
1
4OG
1
Ligand/Ion
3-(1-BENZOTHIOPHEN-3-YL)-L-ALANINE
2
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
4
MG
3
Ligand/Ion
MAGNESIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ATP A:504 , HOH A:607 , HOH A:660 , HOH A:662 , HOH A:693
binding site for residue MG A 501
02
AC2
SOFTWARE
GLU A:396 , SER A:399 , MG A:503 , ATP A:504 , HOH A:686 , HOH A:702
binding site for residue MG A 502
03
AC3
SOFTWARE
GLU A:396 , MG A:502 , ATP A:504 , HOH A:659 , HOH A:686 , HOH A:726
binding site for residue MG A 503
04
AC4
SOFTWARE
ARG A:330 , GLU A:332 , HIS A:338 , LEU A:339 , PHE A:342 , MET A:344 , GLU A:396 , LEU A:397 , SER A:398 , SER A:399 , GLY A:421 , GLY A:423 , ARG A:426 , MG A:501 , MG A:502 , MG A:503 , EDO A:510 , HOH A:607 , HOH A:651 , HOH A:659 , HOH A:660 , HOH A:662 , HOH A:674 , HOH A:686 , HOH A:693 , HOH A:702
binding site for residue ATP A 504
05
AC5
SOFTWARE
ASN A:241 , ARG A:439 , ALA A:440 , ASN A:448 , GLY A:449 , HOH A:612
binding site for residue EDO A 505
06
AC6
SOFTWARE
TYR A:242 , GLU A:249 , LYS A:431 , HIS A:432
binding site for residue EDO A 506
07
AC7
SOFTWARE
ASP A:256 , ARG A:257 , HIS A:369
binding site for residue EDO A 507
08
AC8
SOFTWARE
ASP A:373 , LYS A:375 , HIS A:392 , GLY A:393 , HOH A:663
binding site for residue EDO A 508
09
AC9
SOFTWARE
ASP A:313 , MET A:350 , GLY A:412 , ILE A:413 , ASP A:414 , LYS A:415 , HOH A:605
binding site for residue EDO A 509
10
AD1
SOFTWARE
HIS A:338 , ASP A:394 , GLU A:396 , ARG A:426 , ATP A:504
binding site for residue EDO A 510
11
AD2
SOFTWARE
TYR A:272 , ASN A:307 , ARG A:310 , LYS A:311 , GLU A:357 , GLU A:444
binding site for residue EDO A 511
12
AD3
SOFTWARE
MET A:300 , LEU A:301 , ALA A:302 , LEU A:305 , MET A:344 , SER A:399 , HOH A:651
binding site for residue 4OG A 512
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (55 KB)
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