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4ZHQ
Asym. Unit
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Asym.Unit (376 KB)
Biol.Unit 1 (366 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TUBULIN-STATHMIN-TTL-MMAE COMPLEX
Authors
:
Y. Wang, R. Zhang
Date
:
26 Apr 15 (Deposition) - 27 Jul 16 (Release) - 27 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Structural Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wang, F. W. Benz, Y. Wu, Q. Wang, Y. Chen, X. Chen, H. Li, Y. Zhang, R. Zhang, J. Yang
Structural Insights Into The Pharmacophore Of Vinca Domain Inhibitors Of Microtubules
Mol. Pharmacol. V. 89 233 2016
[
close entry info
]
Hetero Components
(8, 23)
Info
All Hetero Components
1a: N-METHYL-L-VALYL-N-[(3R,4S,5S)-1-{... (4Q5a)
2a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
4a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
6a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
6b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
7a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
7b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
8a: MAGNESIUM ION (MGa)
8b: MAGNESIUM ION (MGb)
8c: MAGNESIUM ION (MGc)
8d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4Q5
1
Ligand/Ion
N-METHYL-L-VALYL-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S,2R)-1-HYDROXY-1-PHENYLPROPAN-2-YL]AMINO}-1-METHOXY-2-METHYL-3-OXOPROPYL]PYRROLIDIN-1-YL}-3-METHOXY-5-METHYL-1-OXOHEPTAN-4-YL]-N-METHYL-L-VALINAMIDE
2
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
3
CA
3
Ligand/Ion
CALCIUM ION
4
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
5
GOL
8
Ligand/Ion
GLYCEROL
6
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
7
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8
MG
4
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:607 , HOH A:610 , HOH A:612 , HOH A:627 , HOH A:630 , HOH A:633 , LYS B:254
binding site for residue GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:607 , HOH A:612 , HOH A:630 , HOH A:633
binding site for residue MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:608
binding site for residue CA A 503
04
AC4
SOFTWARE
SER A:158 , LYS A:164 , LYS A:166 , ASP A:199 , HOH A:639 , HOH A:662 , ASP E:44
binding site for residue GOL A 504
05
AC5
SOFTWARE
ASN A:216 , PRO A:274 , VAL A:275 , ALA A:294 , ASN A:300
binding site for residue GOL A 505
06
AC6
SOFTWARE
ARG A:221 , TYR A:224
binding site for residue GOL A 506
07
AC7
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , 4Q5 B:507 , HOH B:607 , HOH B:617 , HOH B:622 , HOH B:627 , HOH B:628 , HOH B:635 , HOH B:655
binding site for residue GDP B 501
08
AC8
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:624 , HOH B:628 , HOH B:665 , HOH C:682
binding site for residue MG B 502
09
AC9
SOFTWARE
GLU B:113 , HOH B:629
binding site for residue CA B 503
10
AD1
SOFTWARE
ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253
binding site for residue MES B 504
11
AD2
SOFTWARE
PHE B:296 , ASP B:297 , ALA B:298 , ARG B:308 , VAL B:335 , ASN B:339 , TYR B:342 , HOH B:609
binding site for residue MES B 505
12
AD3
SOFTWARE
ARG B:401 , GLU C:434 , GOL C:507
binding site for residue GOL B 506
13
AD4
SOFTWARE
GLN B:11 , GLN B:15 , LYS B:176 , VAL B:177 , ASP B:179 , THR B:223 , TYR B:224 , GLY B:225 , GDP B:501 , HOH B:612 , HOH B:613 , HOH B:640 , HOH B:641 , ALA C:247 , PRO C:325 , ASN C:329 , PHE C:351
binding site for residue 4Q5 B 507
14
AD5
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:617 , HOH C:622 , HOH C:626 , HOH C:630 , HOH C:631 , HOH C:655 , HOH C:667 , LYS D:254
binding site for residue GTP C 501
15
AD6
SOFTWARE
GTP C:501 , HOH C:617 , HOH C:622 , HOH C:630 , HOH C:631
binding site for residue MG C 502
16
AD7
SOFTWARE
GLN C:133 , GLY C:134 , PHE C:135 , LEU C:136 , SER C:165 , THR C:253 , GLN C:256
binding site for residue GOL C 503
17
AD8
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:608
binding site for residue CA C 504
18
AD9
SOFTWARE
ASP C:205 , GLU C:207 , LYS C:304 , ARG C:390 , HOH C:629
binding site for residue GOL C 505
19
AE1
SOFTWARE
ALA C:19 , GLU C:22 , ARG C:229 , SER C:232 , GLN C:233 , VAL C:363 , HOH C:697
binding site for residue GOL C 506
20
AE2
SOFTWARE
GOL B:506 , ASP C:431 , VAL C:435 , HOH C:668
binding site for residue GOL C 507
21
AE3
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:603 , HOH D:604 , HOH D:607 , HOH D:611
binding site for residue GDP D 501
22
AE4
SOFTWARE
GLN D:11 , GDP D:501 , HOH D:607
binding site for residue MG D 502
23
AE5
SOFTWARE
LYS F:74 , ILE F:148 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:202 , ARG F:222 , THR F:241 , ASN F:242 , ASP F:318 , ILE F:330 , GLU F:331 , ASN F:333
binding site for residue ACP F 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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