PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4ZHF
Asym. Unit
Info
Asym.Unit (386 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (66 KB)
Biol.Unit 4 (66 KB)
Biol.Unit 5 (65 KB)
Biol.Unit 6 (66 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SIDEROCALIN-MEDIATED RECOGNITION AND CELLULAR UPTAKE OF ACTINIDES
Authors
:
B. E. Allred, P. B. Rupert, S. S. Gauny, D. D. An, C. Y. Ralston, M. Sturzbe Hoehne, R. K. Strong, R. J. Abergel
Date
:
24 Apr 15 (Deposition) - 05 Aug 15 (Release) - 02 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Metal Binding Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. E. Allred, P. B. Rupert, S. S. Gauny, D. D. An, C. Y. Ralston, M. Sturzbecher-Hoehne, R. K. Strong, R. J. Abergel
Siderocalin-Mediated Recognition, Sensitization, And Cellular Uptake Of Actinides.
Proc. Natl. Acad. Sci. Usa V. 112 10342 2015
[
close entry info
]
Hetero Components
(4, 26)
Info
All Hetero Components
1a: N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-... (4OLa)
1b: N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-... (4OLb)
1c: N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-... (4OLc)
1d: N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-... (4OLd)
1e: N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-... (4OLe)
1f: N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-... (4OLf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
4a: CURIUM ION (ZCMa)
4b: CURIUM ION (ZCMb)
4c: CURIUM ION (ZCMc)
4d: CURIUM ION (ZCMd)
4e: CURIUM ION (ZCMe)
4f: CURIUM ION (ZCMf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4OL
6
Ligand/Ion
N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-N-(3-{[(1-HYDROXY-6-OXO-1,6-DIHYDROPYRIDIN-2-YL)CARBONYL]AMINO}PROPYL)-6-OXO-1,6-DIHYDROPYRIDINE-2-CARBOXAMIDE]
2
GOL
4
Ligand/Ion
GLYCEROL
3
SO4
10
Ligand/Ion
SULFATE ION
4
ZCM
6
Ligand/Ion
CURIUM ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
4OL A:202
binding site for residue ZCM A 201
02
AC2
SOFTWARE
ALA A:40 , ILE A:41 , SER A:68 , LEU A:70 , TRP A:79 , ARG A:81 , TYR A:100 , TYR A:106 , LYS A:125 , TYR A:132 , LYS A:134 , ZCM A:201 , SO4 A:203 , HOH A:312 , HOH A:315 , HOH A:325
binding site for residue 4OL A 202
03
AC3
SOFTWARE
TYR A:52 , THR A:54 , SER A:68 , ARG A:81 , PHE A:123 , LYS A:134 , THR A:136 , TYR A:138 , 4OL A:202
binding site for residue SO4 A 203
04
AC4
SOFTWARE
4OL B:202
binding site for residue ZCM B 201
05
AC5
SOFTWARE
ILE B:41 , TYR B:52 , SER B:68 , LEU B:70 , TRP B:79 , TYR B:100 , TYR B:106 , LYS B:125 , PHE B:133 , LYS B:134 , ZCM B:201 , SO4 B:204 , HOH B:301 , HOH B:305 , HOH B:310 , HOH B:332
binding site for residue 4OL B 202
06
AC6
SOFTWARE
ASN B:114 , HIS B:118 , GLN D:117
binding site for residue SO4 B 203
07
AC7
SOFTWARE
TYR B:52 , THR B:54 , SER B:68 , ARG B:81 , PHE B:123 , LYS B:134 , TYR B:138 , 4OL B:202
binding site for residue SO4 B 204
08
AC8
SOFTWARE
LYS B:59 , GLU B:60 , ASP B:61
binding site for residue GOL B 205
09
AC9
SOFTWARE
4OL C:202
binding site for residue ZCM C 201
10
AD1
SOFTWARE
ALA C:40 , ILE C:41 , TYR C:52 , SER C:68 , TRP C:79 , ARG C:81 , TYR C:100 , TYR C:106 , LYS C:125 , LYS C:134 , ZCM C:201 , SO4 C:204 , HOH C:301 , HOH C:303 , HOH C:308 , HOH C:321
binding site for residue 4OL C 202
11
AD2
SOFTWARE
LYS C:75 , ILE D:8 , ASN D:164 , HIS D:165
binding site for residue SO4 C 203
12
AD3
SOFTWARE
TYR C:52 , THR C:54 , SER C:68 , ARG C:81 , PHE C:123 , LYS C:134 , THR C:136 , TYR C:138 , 4OL C:202 , HOH C:324
binding site for residue SO4 C 204
13
AD4
SOFTWARE
GLN A:117 , ASN C:114 , HIS C:118
binding site for residue GOL C 205
14
AD5
SOFTWARE
4OL D:202
binding site for residue ZCM D 201
15
AD6
SOFTWARE
ILE D:41 , TYR D:52 , SER D:68 , LEU D:70 , TRP D:79 , TYR D:100 , TYR D:106 , LYS D:125 , LYS D:134 , ZCM D:201 , SO4 D:203 , HOH D:302 , HOH D:308 , HOH D:321 , HOH D:330
binding site for residue 4OL D 202
16
AD7
SOFTWARE
TYR D:52 , THR D:54 , SER D:68 , ARG D:81 , PHE D:123 , LYS D:134 , THR D:136 , TYR D:138 , 4OL D:202 , HOH D:316
binding site for residue SO4 D 203
17
AD8
SOFTWARE
ASN D:114 , HOH D:317 , ASN F:116
binding site for residue GOL D 204
18
AD9
SOFTWARE
HIS C:165 , LYS D:75
binding site for residue SO4 D 205
19
AE1
SOFTWARE
4OL E:202
binding site for residue ZCM E 201
20
AE2
SOFTWARE
ALA E:40 , ILE E:41 , TYR E:52 , SER E:68 , TRP E:79 , ARG E:81 , TYR E:106 , PHE E:123 , LYS E:125 , TYR E:132 , PHE E:133 , LYS E:134 , ZCM E:201 , SO4 E:203 , HOH E:322
binding site for residue 4OL E 202
21
AE3
SOFTWARE
TYR E:52 , THR E:54 , SER E:68 , ARG E:81 , PHE E:123 , LYS E:134 , THR E:136 , TYR E:138 , 4OL E:202
binding site for residue SO4 E 203
22
AE4
SOFTWARE
LYS E:75 , PRO F:162 , ASN F:164 , HIS F:165
binding site for residue GOL E 204
23
AE5
SOFTWARE
ASN A:114 , HIS A:118 , ASN E:116 , HOH E:301
binding site for residue SO4 E 205
24
AE6
SOFTWARE
4OL F:202
binding site for residue ZCM F 201
25
AE7
SOFTWARE
ILE F:41 , SER F:68 , LEU F:70 , TRP F:79 , TYR F:100 , TYR F:106 , LYS F:125 , LYS F:134 , ZCM F:201 , SO4 F:203 , HOH F:301 , HOH F:310 , HOH F:317
binding site for residue 4OL F 202
26
AE8
SOFTWARE
TYR F:52 , THR F:54 , SER F:68 , ARG F:81 , PHE F:123 , LYS F:134 , THR F:136 , TYR F:138 , 4OL F:202 , HOH F:301
binding site for residue SO4 F 203
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (386 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
Header - Biol.Unit 2
Biol.Unit 3 (66 KB)
Header - Biol.Unit 3
Biol.Unit 4 (66 KB)
Header - Biol.Unit 4
Biol.Unit 5 (65 KB)
Header - Biol.Unit 5
Biol.Unit 6 (66 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4ZHF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
