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4Z87
Biol. Unit 3
Info
Asym.Unit (936 KB)
Biol.Unit 1, α-C (1.8 MB)
Biol.Unit 1 (1.8 MB)
Biol.Unit 2, α-C (1.8 MB)
Biol.Unit 2 (1.8 MB)
Biol.Unit 3, α-C (1.8 MB)
Biol.Unit 3 (1.8 MB)
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Title
:
STRUCTURE OF THE IMP DEHYDROGENASE FROM ASHBYA GOSSYPII BOUND TO GDP
Authors
:
R. M. Buey, J. M. De Pereda, J. L. Revuelta
Date
:
08 Apr 15 (Deposition) - 25 Nov 15 (Release) - 25 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (4x)
Biol. Unit 2: C,D (4x)
Biol. Unit 3: C,D (4x)
Keywords
:
Imp Dehydrgoenase, Bateman Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Buey, R. Ledesma-Amaro, A. Velazquez-Campoy, M. Balsera, M. Chagoyen, J. M. De Pereda, J. L. Revuelta
Guanine Nucleotide Binding To The Bateman Domain Mediates The Allosteric Inhibition Of Eukaryotic Imp Dehydrogenases.
Nat Commun V. 6 8923 2015
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
1b: GUANOSINE-5'-MONOPHOSPHATE (5GPb)
1c: GUANOSINE-5'-MONOPHOSPHATE (5GPc)
1d: GUANOSINE-5'-MONOPHOSPHATE (5GPd)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
3d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
3e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
3f: GUANOSINE-5'-DIPHOSPHATE (GDPf)
3g: GUANOSINE-5'-DIPHOSPHATE (GDPg)
3h: GUANOSINE-5'-DIPHOSPHATE (GDPh)
3i: GUANOSINE-5'-DIPHOSPHATE (GDPi)
3j: GUANOSINE-5'-DIPHOSPHATE (GDPj)
3k: GUANOSINE-5'-DIPHOSPHATE (GDPk)
3l: GUANOSINE-5'-DIPHOSPHATE (GDPl)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5GP
4
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
ACT
-1
Ligand/Ion
ACETATE ION
3
GDP
12
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
K
-1
Ligand/Ion
POTASSIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AD4 (SOFTWARE)
04: AD5 (SOFTWARE)
05: AD6 (SOFTWARE)
06: AD7 (SOFTWARE)
07: AD8 (SOFTWARE)
08: AD9 (SOFTWARE)
09: AE1 (SOFTWARE)
10: AE2 (SOFTWARE)
11: AE3 (SOFTWARE)
12: AE4 (SOFTWARE)
13: AE5 (SOFTWARE)
14: AE6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
GLU A:117 , ASN A:118 , GLY A:119 , LEU A:196 , GLU A:197 , ASN A:200 , ASP A:228 , LEU A:229 , ASN A:232 , LYS A:240 , LYS A:245 , HOH A:701 , THR D:8 , GLU D:11
binding site for residue GDP A 604
02
AC6
SOFTWARE
SER A:58 , THR A:66 , ASN A:68 , ASP D:5
binding site for residue ACT A 606
03
AD4
SOFTWARE
SER C:74 , MET C:76 , ASN C:306 , ARG C:325 , GLY C:331 , SER C:332 , ILE C:333 , CYS C:334 , THR C:336 , ASP C:367 , GLY C:369 , MET C:388 , GLY C:390 , GLY C:391 , TYR C:414 , GLY C:416 , MET C:417 , GLY C:418 , GLN C:448 , GLY C:449 , ACT C:606 , HOH C:738 , HOH C:746
binding site for residue 5GP C 601
04
AD5
SOFTWARE
THR C:165 , SER C:166 , ASP C:168 , THR C:184 , ASP C:186 , VAL C:187 , ILE C:188 , LYS C:208 , GLY C:209 , ARG D:167 , LYS D:207
binding site for residue GDP C 602
05
AD6
SOFTWARE
LYS C:115 , TYR C:116 , ASN C:118 , ILE C:121 , PRO C:124 , VAL C:125 , PHE C:145 , ALA C:146 , GLY C:147 , LYS C:210 , SER C:225 , THR C:227 , ASP C:228 , LYS C:231 , HOH C:712
binding site for residue GDP C 603
06
AD7
SOFTWARE
ALA B:7 , GLU B:11 , HIS B:318 , GLU C:117 , ASN C:118 , GLY C:119 , LEU C:196 , ASN C:200 , ASP C:228 , LEU C:229 , ASN C:232 , LYS C:240 , LYS C:245
binding site for residue GDP C 604
07
AD8
SOFTWARE
GLY C:329 , GLY C:331 , CYS C:334 , GLU C:507 , GLY C:508 , GLY C:509
binding site for residue K C 605
08
AD9
SOFTWARE
ASP C:277 , SER C:278 , ARG C:325 , 5GP C:601
binding site for residue ACT C 606
09
AE1
SOFTWARE
LEU C:91 , TYR C:468
binding site for residue ACT C 607
10
AE2
SOFTWARE
SER D:74 , MET D:76 , ARG D:325 , GLY D:331 , SER D:332 , ILE D:333 , CYS D:334 , THR D:336 , ASP D:367 , GLY D:369 , MET D:388 , GLY D:390 , GLY D:391 , TYR D:414 , GLY D:416 , MET D:417 , GLY D:418 , GLN D:448 , GLY D:449 , HOH D:712 , HOH D:739
binding site for residue 5GP D 600
11
AE3
SOFTWARE
ARG C:167 , LYS C:207 , THR D:165 , SER D:166 , ARG D:167 , ASP D:168 , THR D:184 , ASP D:186 , VAL D:187 , ILE D:188 , LYS D:208 , GLY D:209 , HOH D:701 , HOH D:758
binding site for residue GDP D 601
12
AE4
SOFTWARE
LYS D:115 , TYR D:116 , ASN D:118 , PRO D:124 , VAL D:125 , PHE D:145 , ALA D:146 , GLY D:147 , LYS D:210 , SER D:225 , THR D:227 , ASP D:228 , LYS D:231 , HOH D:758
binding site for residue GDP D 602
13
AE5
SOFTWARE
GLU D:117 , ASN D:118 , GLY D:119 , ASN D:200 , ASP D:228 , ASN D:232 , LYS D:240 , LYS D:245 , HOH D:711
binding site for residue GDP D 603
14
AE6
SOFTWARE
GLY D:329 , GLY D:331 , CYS D:334 , GLU D:507 , GLY D:508 , GLY D:509
binding site for residue K D 604
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (936 KB)
Header - Asym.Unit
Biol.Unit 1 (1.8 MB)
Header - Biol.Unit 1
Biol.Unit 2 (1.8 MB)
Header - Biol.Unit 2
Biol.Unit 3 (1.8 MB)
Header - Biol.Unit 3
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