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4Z87
Asym. Unit
Info
Asym.Unit (936 KB)
Biol.Unit 1, α-C (1.8 MB)
Biol.Unit 1 (1.8 MB)
Biol.Unit 2, α-C (1.8 MB)
Biol.Unit 2 (1.8 MB)
Biol.Unit 3, α-C (1.8 MB)
Biol.Unit 3 (1.8 MB)
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(1)
Title
:
STRUCTURE OF THE IMP DEHYDROGENASE FROM ASHBYA GOSSYPII BOUND TO GDP
Authors
:
R. M. Buey, J. M. De Pereda, J. L. Revuelta
Date
:
08 Apr 15 (Deposition) - 25 Nov 15 (Release) - 25 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (4x)
Biol. Unit 2: C,D (4x)
Biol. Unit 3: C,D (4x)
Keywords
:
Imp Dehydrgoenase, Bateman Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Buey, R. Ledesma-Amaro, A. Velazquez-Campoy, M. Balsera, M. Chagoyen, J. M. De Pereda, J. L. Revuelta
Guanine Nucleotide Binding To The Bateman Domain Mediates The Allosteric Inhibition Of Eukaryotic Imp Dehydrogenases.
Nat Commun V. 6 8923 2015
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
1b: GUANOSINE-5'-MONOPHOSPHATE (5GPb)
1c: GUANOSINE-5'-MONOPHOSPHATE (5GPc)
1d: GUANOSINE-5'-MONOPHOSPHATE (5GPd)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
3d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
3e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
3f: GUANOSINE-5'-DIPHOSPHATE (GDPf)
3g: GUANOSINE-5'-DIPHOSPHATE (GDPg)
3h: GUANOSINE-5'-DIPHOSPHATE (GDPh)
3i: GUANOSINE-5'-DIPHOSPHATE (GDPi)
3j: GUANOSINE-5'-DIPHOSPHATE (GDPj)
3k: GUANOSINE-5'-DIPHOSPHATE (GDPk)
3l: GUANOSINE-5'-DIPHOSPHATE (GDPl)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
4
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
ACT
4
Ligand/Ion
ACETATE ION
3
GDP
12
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
K
4
Ligand/Ion
POTASSIUM ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:74 , MET A:76 , ARG A:325 , GLY A:331 , SER A:332 , ILE A:333 , CYS A:334 , THR A:336 , ASP A:367 , GLY A:368 , GLY A:369 , MET A:388 , GLY A:390 , GLY A:391 , TYR A:414 , GLY A:416 , MET A:417 , GLY A:418 , SER A:419 , GLN A:448 , GLY A:449 , HOH A:708 , HOH A:785
binding site for residue 5GP A 601
02
AC2
SOFTWARE
THR A:165 , SER A:166 , ASP A:168 , THR A:184 , ASP A:186 , VAL A:187 , ILE A:188 , LYS A:208 , GLY A:209 , HOH A:703 , HOH A:705 , HOH A:754 , HOH A:782 , HOH A:790 , HOH A:812 , ARG B:167 , LYS B:207
binding site for residue GDP A 602
03
AC3
SOFTWARE
LYS A:115 , TYR A:116 , ASN A:118 , PRO A:124 , VAL A:125 , PHE A:145 , ALA A:146 , GLY A:147 , LYS A:210 , SER A:225 , THR A:227 , ASP A:228 , LYS A:231 , HOH A:742 , HOH A:773 , HOH A:775
binding site for residue GDP A 603
04
AC4
SOFTWARE
GLU A:117 , ASN A:118 , GLY A:119 , LEU A:196 , GLU A:197 , ASN A:200 , ASP A:228 , LEU A:229 , ASN A:232 , LYS A:240 , LYS A:245 , HOH A:701 , THR D:8 , GLU D:11
binding site for residue GDP A 604
05
AC5
SOFTWARE
GLY A:329 , GLY A:331 , CYS A:334 , GLU A:507 , GLY A:508 , GLY A:509
binding site for residue K A 605
06
AC6
SOFTWARE
SER A:58 , THR A:66 , ASN A:68 , ASP D:5
binding site for residue ACT A 606
07
AC7
SOFTWARE
SER B:74 , MET B:76 , ASN B:306 , ARG B:325 , GLY B:331 , SER B:332 , CYS B:334 , THR B:336 , ASP B:367 , GLY B:369 , MET B:388 , GLY B:390 , GLY B:391 , TYR B:414 , GLY B:416 , MET B:417 , GLY B:418 , GLN B:448 , HOH B:736 , HOH B:790
binding site for residue 5GP B 601
08
AC8
SOFTWARE
ARG A:167 , LYS A:207 , THR B:165 , SER B:166 , ARG B:167 , ASP B:168 , THR B:184 , ASP B:186 , VAL B:187 , ILE B:188 , LYS B:208 , GLY B:209 , HOH B:734 , HOH B:743 , HOH B:764 , HOH B:783
binding site for residue GDP B 602
09
AC9
SOFTWARE
LYS B:115 , TYR B:116 , ASN B:118 , PRO B:124 , VAL B:125 , PHE B:145 , ALA B:146 , GLY B:147 , LYS B:210 , SER B:225 , THR B:227 , ASP B:228 , LYS B:231 , HOH B:709 , HOH B:711 , HOH B:727
binding site for residue GDP B 603
10
AD1
SOFTWARE
GLU B:117 , ASN B:118 , GLY B:119 , ASN B:200 , ASP B:228 , LEU B:229 , ASN B:232 , PRO B:236 , LYS B:240 , LYS B:245
binding site for residue GDP B 604
11
AD2
SOFTWARE
GLY B:329 , GLY B:331 , CYS B:334 , GLU B:507 , GLY B:508 , GLY B:509
binding site for residue K B 605
12
AD3
SOFTWARE
LEU B:91 , ILE B:464
binding site for residue ACT B 606
13
AD4
SOFTWARE
SER C:74 , MET C:76 , ASN C:306 , ARG C:325 , GLY C:331 , SER C:332 , ILE C:333 , CYS C:334 , THR C:336 , ASP C:367 , GLY C:369 , MET C:388 , GLY C:390 , GLY C:391 , TYR C:414 , GLY C:416 , MET C:417 , GLY C:418 , GLN C:448 , GLY C:449 , ACT C:606 , HOH C:738 , HOH C:746
binding site for residue 5GP C 601
14
AD5
SOFTWARE
THR C:165 , SER C:166 , ASP C:168 , THR C:184 , ASP C:186 , VAL C:187 , ILE C:188 , LYS C:208 , GLY C:209 , ARG D:167 , LYS D:207
binding site for residue GDP C 602
15
AD6
SOFTWARE
LYS C:115 , TYR C:116 , ASN C:118 , ILE C:121 , PRO C:124 , VAL C:125 , PHE C:145 , ALA C:146 , GLY C:147 , LYS C:210 , SER C:225 , THR C:227 , ASP C:228 , LYS C:231 , HOH C:712
binding site for residue GDP C 603
16
AD7
SOFTWARE
ALA B:7 , GLU B:11 , HIS B:318 , GLU C:117 , ASN C:118 , GLY C:119 , LEU C:196 , ASN C:200 , ASP C:228 , LEU C:229 , ASN C:232 , LYS C:240 , LYS C:245
binding site for residue GDP C 604
17
AD8
SOFTWARE
GLY C:329 , GLY C:331 , CYS C:334 , GLU C:507 , GLY C:508 , GLY C:509
binding site for residue K C 605
18
AD9
SOFTWARE
ASP C:277 , SER C:278 , ARG C:325 , 5GP C:601
binding site for residue ACT C 606
19
AE1
SOFTWARE
LEU C:91 , TYR C:468
binding site for residue ACT C 607
20
AE2
SOFTWARE
SER D:74 , MET D:76 , ARG D:325 , GLY D:331 , SER D:332 , ILE D:333 , CYS D:334 , THR D:336 , ASP D:367 , GLY D:369 , MET D:388 , GLY D:390 , GLY D:391 , TYR D:414 , GLY D:416 , MET D:417 , GLY D:418 , GLN D:448 , GLY D:449 , HOH D:712 , HOH D:739
binding site for residue 5GP D 600
21
AE3
SOFTWARE
ARG C:167 , LYS C:207 , THR D:165 , SER D:166 , ARG D:167 , ASP D:168 , THR D:184 , ASP D:186 , VAL D:187 , ILE D:188 , LYS D:208 , GLY D:209 , HOH D:701 , HOH D:758
binding site for residue GDP D 601
22
AE4
SOFTWARE
LYS D:115 , TYR D:116 , ASN D:118 , PRO D:124 , VAL D:125 , PHE D:145 , ALA D:146 , GLY D:147 , LYS D:210 , SER D:225 , THR D:227 , ASP D:228 , LYS D:231 , HOH D:758
binding site for residue GDP D 602
23
AE5
SOFTWARE
GLU D:117 , ASN D:118 , GLY D:119 , ASN D:200 , ASP D:228 , ASN D:232 , LYS D:240 , LYS D:245 , HOH D:711
binding site for residue GDP D 603
24
AE6
SOFTWARE
GLY D:329 , GLY D:331 , CYS D:334 , GLU D:507 , GLY D:508 , GLY D:509
binding site for residue K D 604
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SAPs(SNPs)/Variants
(0, 0)
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Pfam Domains
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