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4Z7Q
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (678 KB)
Biol.Unit 2 (671 KB)
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(1)
Title
:
INTEGRIN ALPHAIIBBETA3 IN COMPLEX WITH AGDV-NH2 PEPTIDE
Authors
:
F. -Y. Lin, J. Zhu, T. A. Springer
Date
:
07 Apr 15 (Deposition) - 16 Dec 15 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,L
Biol. Unit 1: A,B,G,H,I,L (1x)
Biol. Unit 2: C,D,E,F (1x)
Keywords
:
Cell Adhesion, Platelet Aggregation, Membrane Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Y. Lin, J. Zhu, E. T. Eng, N. E. Hudson, T. A. Springer
Beta-Subunit Binding Is Sufficient For Ligands To Open The Integrin Alpha Iib Beta 3 Headpiece.
J. Biol. Chem. V. 291 4537 2016
[
close entry info
]
Hetero Components
(9, 40)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
4a: GLYCEROL (GOLa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
6a: MANGANESE (II) ION (MNa)
6b: MANGANESE (II) ION (MNb)
6c: MANGANESE (II) ION (MNc)
6d: MANGANESE (II) ION (MNd)
6e: MANGANESE (II) ION (MNe)
6f: MANGANESE (II) ION (MNf)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
8a: AMINO GROUP (NH2a)
8b: AMINO GROUP (NH2b)
9a: SULFATE ION (SO4a)
9b: SULFATE ION (SO4b)
9c: SULFATE ION (SO4c)
9d: SULFATE ION (SO4d)
9e: SULFATE ION (SO4e)
9f: SULFATE ION (SO4f)
9g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
8
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
6
MN
6
Ligand/Ion
MANGANESE (II) ION
7
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
NH2
2
Mod. Amino Acid
AMINO GROUP
9
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:243 , ASP A:245 , ASP A:247 , THR A:250 , GLU A:252
binding site for residue CA A 501
02
AC2
SOFTWARE
ASP A:297 , ASN A:299 , ASP A:301 , ARG A:303 , ASP A:305 , HOH A:619
binding site for residue CA A 502
03
AC3
SOFTWARE
ASP A:365 , ASP A:367 , ASP A:369 , TYR A:371 , ASP A:373 , HOH A:625
binding site for residue CA A 503
04
AC4
SOFTWARE
ASP A:426 , ASP A:428 , ASN A:430 , TYR A:432 , ASP A:434 , HOH A:644
binding site for residue CA A 504
05
AC5
SOFTWARE
ILE A:154 , TYR A:155 , SER A:161
binding site for residue SO4 A 505
06
AC6
SOFTWARE
PHE A:10 , PRO A:410 , PHE A:411 , GLN A:444 , PRO C:383
binding site for residue SO4 A 506
07
AC7
SOFTWARE
ARG A:400 , SER A:401 , ARG A:402 , HOH A:601
binding site for residue SO4 A 507
08
AC8
SOFTWARE
ASN A:227 , ARG A:276 , ARG A:279 , HOH A:607 , HOH A:631
binding site for residue GOL A 508
09
AC9
SOFTWARE
SER B:121 , SER B:123 , GLU B:220 , HOH B:2105 , HOH B:2147 , ASP G:410
binding site for residue MN B 2001
10
AD1
SOFTWARE
SER B:123 , ASP B:127 , ASP B:251 , HOH B:2102 , HOH B:2104 , HOH B:2239
binding site for residue MN B 2002
11
AD2
SOFTWARE
ASP B:158 , ASN B:215 , ASP B:217 , PRO B:219 , GLU B:220
binding site for residue MN B 2003
12
AD3
SOFTWARE
GLU C:243 , ASP C:245 , ASP C:247 , THR C:250 , GLU C:252
binding site for residue CA C 501
13
AD4
SOFTWARE
ASP C:297 , ASN C:299 , ASP C:301 , ARG C:303 , ASP C:305
binding site for residue CA C 502
14
AD5
SOFTWARE
ASP C:365 , ASP C:367 , ASP C:369 , TYR C:371 , ASP C:373 , HOH C:613
binding site for residue CA C 503
15
AD6
SOFTWARE
ASP C:426 , ASP C:428 , ASN C:430 , TYR C:432 , ASP C:434
binding site for residue CA C 504
16
AD7
SOFTWARE
ARG C:281 , BMA D:506
binding site for residue MAN C 505
17
AD8
SOFTWARE
ALA C:89 , ARG C:90 , HIS C:112
binding site for residue SO4 C 506
18
AD9
SOFTWARE
ARG C:400 , SER C:401 , ARG C:402 , HOH C:607
binding site for residue SO4 C 507
19
AE1
SOFTWARE
SER C:225 , ASN C:227 , ARG C:276
binding site for residue SO4 C 508
20
AE2
SOFTWARE
HOH A:879 , GLN C:444
binding site for residue CL C 509
21
AE3
SOFTWARE
SER D:123 , ASP D:126 , ASP D:127 , MET D:335 , HOH D:611 , HOH D:684
binding site for residue MN D 501
22
AE4
SOFTWARE
ASP D:158 , ASN D:215 , ASP D:217 , PRO D:219 , GLU D:220
binding site for residue MN D 502
23
AE5
SOFTWARE
SER D:121 , TYR D:122 , SER D:123 , ASN D:215 , GLU D:220 , HOH D:601 , ASP I:410 , HOH I:2101
binding site for residue MN D 509
24
AE6
SOFTWARE
SER L:30 , SER L:67 , GLY L:68
binding site for residue SO4 L 301
25
AE7
SOFTWARE
ASN B:99 , SER B:101 , HOH B:2152 , HOH B:2196
binding site for Mono-Saccharide NAG B 2004 bound to ASN B 99
26
AE8
SOFTWARE
TRP A:262 , ARG A:281 , MET A:285 , LEU B:317 , ASN B:320 , HOH B:2142 , HOH B:2170 , HOH B:2186 , HOH B:2199
binding site for Poly-Saccharide residues NAG B 2005 through MAN B 2009 bound to ASN B 320
27
AE9
SOFTWARE
ASN B:371 , SER B:398 , ILE B:399 , GLU B:400
binding site for Poly-Saccharide residues NAG B 2010 through NAG B 2011 bound to ASN B 371
28
AF1
SOFTWARE
LYS D:98 , ASN D:99 , SER D:101 , NAG D:508
binding site for Mono-Saccharide NAG D 503 bound to ASN D 99
29
AF2
SOFTWARE
ARG C:281 , MAN C:505 , ASN D:316 , LEU D:317 , ASN D:320 , HOH D:620 , HOH D:652
binding site for Poly-Saccharide residues NAG D 504 through BMA D 506 bound to ASN D 320
30
AF3
SOFTWARE
ASN D:371 , SER D:398 , ILE D:399 , GLU D:400 , NAG D:503
binding site for Poly-Saccharide residues NAG D 507 through NAG D 508 bound to ASN D 371
31
AF4
SOFTWARE
SER B:123 , GLY G:409 , ASP G:410
binding site for Di-peptide VAL G 411 and NH2 G 412
32
AF5
SOFTWARE
GLY I:409 , ASP I:410
binding site for Di-peptide VAL I 411 and NH2 I 412
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (1.3 MB)
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Biol.Unit 1 (678 KB)
Header - Biol.Unit 1
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