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4Z7O
Biol. Unit 1
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (669 KB)
Biol.Unit 2 (668 KB)
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(1)
Title
:
INTEGRIN ALPHAIIBBETA3 IN COMPLEX WITH AGDV PEPTIDE
Authors
:
F. Y. Lin, J. Zhu, T. A. Springer
Date
:
07 Apr 15 (Deposition) - 27 Jan 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,L
Biol. Unit 1: A,B,G,H,L (1x)
Biol. Unit 2: C,D,E,F,I (1x)
Keywords
:
Cell Adhesion, Platelet Aggregation, Membrane Protein-Immune System Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
F. Y. Lin, J. Zhu, E. T. Eng, N. E. Hudson, T. A. Springer
Beta-Subunit Binding Is Sufficient For Ligands To Open The Integrin Alpha Iib Beta 3 Headpiece.
J. Biol. Chem. V. 291 4537 2016
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
5d: MANGANESE (II) ION (MNd)
5e: MANGANESE (II) ION (MNe)
5f: MANGANESE (II) ION (MNf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
MN
-1
Ligand/Ion
MANGANESE (II) ION
6
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AD8 (SOFTWARE)
10: AD9 (SOFTWARE)
11: AE1 (SOFTWARE)
12: AE2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:386 , HOH A:604 , HOH A:613 , ARG C:386 , PRO C:412 , THR C:413
binding site for residue SO4 A 501
02
AC2
SOFTWARE
GLU A:243 , ASP A:245 , ASP A:247 , THR A:250 , GLU A:252
binding site for residue CA A 502
03
AC3
SOFTWARE
ASP A:297 , ASN A:299 , ASP A:301 , ARG A:303 , ASP A:305 , HOH A:611
binding site for residue CA A 503
04
AC4
SOFTWARE
ASP A:365 , ASP A:367 , ASP A:369 , TYR A:371 , ASP A:373 , HOH A:656
binding site for residue CA A 504
05
AC5
SOFTWARE
ASP A:426 , ASP A:428 , ASN A:430 , TYR A:432 , ASP A:434 , HOH A:619
binding site for residue CA A 505
06
AC6
SOFTWARE
SER B:121 , SER B:123 , GLU B:220 , HOH B:2108 , HOH B:2116 , ASP G:410
binding site for residue MN B 2001
07
AC7
SOFTWARE
SER B:123 , ASP B:126 , ASP B:127 , ASP B:251 , HOH B:2129 , HOH B:2172
binding site for residue MN B 2002
08
AC8
SOFTWARE
ASP B:158 , ASN B:215 , ASP B:217 , PRO B:219 , GLU B:220
binding site for residue MN B 2003
09
AD8
SOFTWARE
SER L:30 , SER L:67 , GLY L:68 , HOH L:403
binding site for residue SO4 L 301
10
AD9
SOFTWARE
ASN B:99
binding site for Mono-Saccharide NAG B 2004 bound to ASN B 99
11
AE1
SOFTWARE
MET A:285 , ASN B:320 , HOH B:2117 , HOH B:2130 , HOH B:2147 , HOH B:2173
binding site for Poly-Saccharide residues NAG B 2005 through MAN B 2009 bound to ASN B 320
12
AE2
SOFTWARE
ASN B:371 , PRO B:381 , SER B:398 , ILE B:399 , GLU B:400
binding site for Poly-Saccharide residues NAG B 2010 through NAG B 2011 bound to ASN B 371
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (669 KB)
Header - Biol.Unit 1
Biol.Unit 2 (668 KB)
Header - Biol.Unit 2
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