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4Z6V
Asym. Unit
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Asym.Unit (563 KB)
Biol.Unit 1 (556 KB)
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Title
:
STRUCTURE OF H200Q VARIANT OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM B.FUSCUM IN COMPLEX WITH 4-NITROCATECHOL AT 1.37 ANG RESOLUTION
Authors
:
E. G. Kovaleva, J. D. Lipscomb
Date
:
06 Apr 15 (Deposition) - 26 Aug 15 (Release) - 16 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dioxygenase, 2-His-1-Carboxylate Facial Triad, Oxygen Activation, Acid-Base Catalysis, Oxidoreductase
(Keyword Search:
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Reference
:
E. G. Kovaleva, M. S. Rogers, J. D. Lipscomb
Structural Basis For Substrate And Oxygen Activation In Homoprotocatechuate 2, 3-Dioxygenase: Roles Of Conserved Active Site Histidine 200.
Biochemistry V. 54 5329 2015
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: 4-NITROCATECHOL (4NCa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
5a: HEXAETHYLENE GLYCOL (P6Ga)
5b: HEXAETHYLENE GLYCOL (P6Gb)
5c: HEXAETHYLENE GLYCOL (P6Gc)
5d: HEXAETHYLENE GLYCOL (P6Gd)
5e: HEXAETHYLENE GLYCOL (P6Ge)
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Label:
No.
Name
Count
Type
Full Name
1
4NC
1
Ligand/Ion
4-NITROCATECHOL
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
3
Ligand/Ion
CHLORIDE ION
4
FE2
4
Ligand/Ion
FE (II) ION
5
P6G
5
Ligand/Ion
HEXAETHYLENE GLYCOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:155 , HIS A:214 , GLU A:267 , HOH A:506 , HOH A:536 , HOH A:742
binding site for residue FE2 A 401
02
AC2
SOFTWARE
GLU A:22 , VAL A:24 , LYS A:68 , LYS A:75 , ARG A:104 , PHE A:108 , ASP A:315 , GLY A:316 , HOH A:578
binding site for residue P6G A 402
03
AC3
SOFTWARE
ARG A:243 , HIS A:248 , ARG A:293
binding site for residue CL A 403
04
AC4
SOFTWARE
HIS B:155 , HIS B:214 , GLU B:267 , HOH B:509 , HOH B:536 , HOH B:708
binding site for residue FE2 B 401
05
AC5
SOFTWARE
ASP A:184 , GLU A:185 , HOH A:687 , ASP B:184 , GLU B:185 , HOH B:689
binding site for residue CA B 402
06
AC6
SOFTWARE
GLU B:22 , THR B:67 , LYS B:68 , LYS B:75 , ARG B:104 , PHE B:108 , ASP B:315 , GLY B:316 , HOH B:640 , HOH B:891
binding site for residue P6G B 403
07
AC7
SOFTWARE
GLN A:182 , ASP A:183 , THR A:284 , ALA A:344 , GLY A:345 , ASP B:183 , ALA B:344 , GLY B:345 , HOH B:503 , HOH B:516 , HOH B:588 , HOH B:602 , HOH B:779 , HOH B:799 , HOH B:959
binding site for residue P6G B 404
08
AC8
SOFTWARE
ARG B:243 , HIS B:248 , ARG B:293 , HOH B:845
binding site for residue CL B 405
09
AC9
SOFTWARE
HIS C:155 , HIS C:214 , GLU C:267 , 4NC C:403 , HOH C:659
binding site for residue FE2 C 401
10
AD1
SOFTWARE
GLU C:22 , LYS C:68 , LYS C:75 , ARG C:104 , PHE C:108 , ASP C:315 , GLY C:316 , HOH C:610
binding site for residue P6G C 402
11
AD2
SOFTWARE
HIS C:155 , TRP C:192 , GLN C:200 , HIS C:214 , ARG C:243 , HIS C:248 , VAL C:250 , SER C:251 , TYR C:257 , GLU C:267 , TYR C:269 , ARG C:292 , ARG C:293 , FE2 C:401 , HOH C:659
binding site for residue 4NC C 403
12
AD3
SOFTWARE
HIS D:155 , HIS D:214 , GLU D:267 , HOH D:504 , HOH D:566 , HOH D:711
binding site for residue FE2 D 401
13
AD4
SOFTWARE
GLU D:22 , THR D:67 , LYS D:68 , LYS D:75 , ARG D:104 , PHE D:108 , ASP D:315 , GLY D:316 , HOH D:646 , HOH D:731
binding site for residue P6G D 402
14
AD5
SOFTWARE
ARG D:243 , HIS D:248 , ARG D:293 , HOH D:827
binding site for residue CL D 403
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Asymmetric Unit 1
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Asym.Unit (563 KB)
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