PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4Z64
Biol. Unit 2
Info
Asym.Unit (138 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (102 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE PLANT PEPTIDE HORMONE RECEPTOR COMPLEX IN ARABIDOPSIS
Authors
:
J. Chai, J. Wang, Z. Han
Date
:
03 Apr 15 (Deposition) - 02 Mar 16 (Release) - 02 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.66
Chains
:
Asym. Unit : A,C,P
Biol. Unit 1: A,C,P (1x)
Biol. Unit 2: A,P (1x)
Keywords
:
Hormone Receptor Complex, Hormone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, H. Li, Z. Han, H. Zhang, T. Wang, G. Lin, J. Chang, W. Yang, J. Cha
Allosteric Receptor Activation By The Plant Peptide Hormone Phytosulfokine
Nature V. 525 265 2015
[
close entry info
]
Hetero Components
(3, 15)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
3a: O-SULFO-L-TYROSINE (TYSa)
3b: O-SULFO-L-TYROSINE (TYSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
3
Ligand/Ion
SULFATE ION
3
TYS
2
Mod. Amino Acid
O-SULFO-L-TYROSINE
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD3 (SOFTWARE)
12: AD4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:327 , ARG A:349 , NAG A:706
binding site for residue SO4 A 711
02
AC2
SOFTWARE
TRP A:253 , GLN A:276 , ARG A:300
binding site for residue SO4 A 712
03
AC3
SOFTWARE
PRO A:621 , ASN A:622 , NAG A:710
binding site for residue SO4 A 713
04
AC5
SOFTWARE
ASN A:106 , SER A:108 , ASP A:130
binding site for Mono-Saccharide NAG A 701 bound to ASN A 106
05
AC6
SOFTWARE
THR A:142 , SER A:143 , ILE A:144 , ASN A:145 , HIS A:166 , HIS A:169 , ASN A:170
binding site for Mono-Saccharide NAG A 702 bound to ASN A 170
06
AC7
SOFTWARE
TRP A:253 , THR A:277 , ARG A:300 , ASN A:301 , GLN P:32
binding site for Poly-Saccharide residues NAG A 703 through NAG A 704 bound to ASN A 301
07
AC8
SOFTWARE
LYS A:286 , ASN A:290 , ASN A:311
binding site for Mono-Saccharide NAG A 705 bound to ASN A 311
08
AC9
SOFTWARE
ARG A:349 , ASN A:373 , SO4 A:711 , TYS P:28 , TYS P:30
binding site for Mono-Saccharide NAG A 706 bound to ASN A 373
09
AD1
SOFTWARE
GLN A:355 , ASN A:378 , SER A:381
binding site for Mono-Saccharide NAG A 707 bound to ASN A 378
10
AD2
SOFTWARE
ASN A:424 , ARG A:426 , TRP A:448 , ASN A:472 , HIS A:532
binding site for Mono-Saccharide NAG A 708 bound to ASN A 472
11
AD3
SOFTWARE
ASN A:533 , ASN A:534
binding site for Mono-Saccharide NAG A 709 bound to ASN A 534
12
AD4
SOFTWARE
ASN A:622 , HIS A:634 , SO4 A:713
binding site for Mono-Saccharide NAG A 710 bound to ASN A 622
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Biol.Unit 2 (102 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4Z64
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help