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4Z0C
Asym. Unit
Info
Asym.Unit (532 KB)
Biol.Unit 1 (523 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TLR13-SSRNA13 COMPLEX
Authors
:
W. Song, Z. Han, J. Chai
Date
:
26 Mar 15 (Deposition) - 07 Oct 15 (Release) - 28 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Immune Receptor, Toll-Like Receptor, Ssrna, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Song, J. Wang, Z. Han, Y. Zhang, H. Zhang, W. Wang, J. Chang, B. Xia, S. Fan, D. Zhang, J. Wang, H. W. Wang, J. Chai
Structural Basis For Specific Recognition Of Single-Strande Rna By Toll-Like Receptor 13
Nat. Struct. Mol. Biol. V. 22 782 2015
[
close entry info
]
Hetero Components
(1, 32)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
1ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
1ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
1ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
1ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
1af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
1x: N-ACETYL-D-GLUCOSAMINE (NAGx)
1y: N-ACETYL-D-GLUCOSAMINE (NAGy)
1z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:329 , GLY A:332 , HIS A:333 , ASN A:357 , SER A:382 , ASP A:383 , HOH A:1018 , HOH A:1059
binding site for residue NAG A 909
02
AC2
SOFTWARE
GLY A:619 , ASN A:644
binding site for residue NAG A 914
03
AC3
SOFTWARE
ASN A:93 , GLU A:96
binding site for Mono-Saccharide NAG A 915 bound to ASN A 93
04
AC4
SOFTWARE
HIS A:83 , HIS A:107 , ASN A:109 , HOH A:1053 , A B:6
binding site for Poly-Saccharide residues NAG A 901 through NAG A 902 bound to ASN A 109
05
AC5
SOFTWARE
ASN A:125
binding site for Mono-Saccharide NAG A 903 bound to ASN A 125
06
AC6
SOFTWARE
TRP A:140 , LYS A:141 , ILE A:142 , SER A:165 , ASN A:167
binding site for Mono-Saccharide NAG A 904 bound to ASN A 167
07
AC7
SOFTWARE
ARG A:207 , ASN A:233 , HOH A:1086
binding site for Mono-Saccharide NAG A 905 bound to ASN A 233
08
AC8
SOFTWARE
ASN A:274 , LYS A:297 , SER A:298
binding site for Mono-Saccharide NAG A 906 bound to ASN A 274
09
AC9
SOFTWARE
GLU A:255 , SER A:278 , ASN A:300 , ASP A:323 , HOH A:1041 , HOH A:1054
binding site for Poly-Saccharide residues NAG A 907 through NAG A 908 bound to ASN A 300
10
AD1
SOFTWARE
TYR A:386 , ASN A:388
binding site for Mono-Saccharide NAG A 910 bound to ASN A 388
11
AD2
SOFTWARE
ASN A:413 , ASP A:437 , SER A:441
binding site for Mono-Saccharide NAG A 911 bound to ASN A 413
12
AD3
SOFTWARE
ARG A:372 , PRO A:396 , ASN A:421 , HIS D:558 , SER D:561 , GLU D:564 , LYS D:591 , LYS D:593 , HOH D:1063
binding site for Poly-Saccharide residues NAG A 912 through NAG A 913 bound to ASN A 421
13
AD4
SOFTWARE
ASN D:93 , GLU D:96 , VAL D:117 , HOH D:1001
binding site for Mono-Saccharide NAG D 917 bound to ASN D 93
14
AD5
SOFTWARE
A C:6 , HIS D:83 , ILE D:87 , HIS D:107 , ASN D:109 , HOH D:1028 , HOH D:1047 , HOH D:1076 , HOH D:1155
binding site for Poly-Saccharide residues NAG D 901 through NAG D 902 bound to ASN D 109
15
AD6
SOFTWARE
ASN D:125 , HOH D:1057
binding site for Mono-Saccharide NAG D 903 bound to ASN D 125
16
AD7
SOFTWARE
SER D:127 , ASN D:152
binding site for Mono-Saccharide NAG D 904 bound to ASN D 152
17
AD8
SOFTWARE
TRP D:140 , LYS D:141 , ILE D:142 , SER D:165 , ASN D:167
binding site for Mono-Saccharide NAG D 905 bound to ASN D 167
18
AD9
SOFTWARE
ASN D:233 , ARG D:279 , NAG D:911
binding site for Poly-Saccharide residues NAG D 906 through NAG D 907 bound to ASN D 233
19
AE1
SOFTWARE
HIS D:241 , ASN D:263 , SER D:265 , ASN D:287
binding site for Mono-Saccharide NAG D 908 bound to ASN D 263
20
AE2
SOFTWARE
ASN D:274 , SER D:298 , HOH D:1002 , HOH D:1006
binding site for Mono-Saccharide NAG D 909 bound to ASN D 274
21
AE3
SOFTWARE
GLU D:255 , SER D:278 , ARG D:279 , ASN D:300 , ASP D:323 , NAG D:907 , HOH D:1003 , HOH D:1022
binding site for Poly-Saccharide residues NAG D 910 through NAG D 911 bound to ASN D 300
22
AE4
SOFTWARE
LEU D:329 , ARG D:330 , GLY D:332 , HIS D:333 , ASN D:357 , HOH D:1052 , HOH D:1105
binding site for Mono-Saccharide NAG D 912 bound to ASN D 357
23
AE5
SOFTWARE
TYR D:386 , ASN D:388 , ASP D:389
binding site for Mono-Saccharide NAG D 913 bound to ASN D 388
24
AE6
SOFTWARE
PRO D:224 , VAL D:247 , SER D:248 , ASN D:413 , ARG D:414 , ASP D:437 , HOH D:1017 , HOH D:1107 , HOH D:1144
binding site for Mono-Saccharide NAG D 914 bound to ASN D 413
25
AE7
SOFTWARE
ARG D:372 , SER D:397 , ASN D:421
binding site for Mono-Saccharide NAG D 915 bound to ASN D 421
26
AE8
SOFTWARE
GLY D:619 , SER D:620 , ASN D:644
binding site for Mono-Saccharide NAG D 916 bound to ASN D 644
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Protein & NOT Site
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Chain D
Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (532 KB)
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Header - Biol.Unit 1
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