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4Z03
Biol. Unit 1
Info
Asym.Unit (167 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
C. BESCII FAMILY 3 PECTATE LYASE DOUBLE MUTANT K108A IN COMPLEX WITH TRIGALACTURONIC ACID
Authors
:
P. M. Alahuhta, V. V. Lunin
Date
:
25 Mar 15 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pl3, Parallel Beta-Helix, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alahuhta, L. E. Taylor, R. Brunecky, D. W. Sammond, W. Michener, M. W. Adams, M. E. Himmel, Y. J. Bomble, V. Lunin
The Catalytic Mechanism And Unique Low Ph Optimum Of Caldicellulosiruptor Bescii Family 3 Pectate Lyase.
Acta Crystallogr. , Sect. D V. 71 1946 2015
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ALPHA-D-GALACTOPYRANURONIC ACID (ADAa)
1b: ALPHA-D-GALACTOPYRANURONIC ACID (ADAb)
1c: ALPHA-D-GALACTOPYRANURONIC ACID (ADAc)
1d: ALPHA-D-GALACTOPYRANURONIC ACID (ADAd)
1e: ALPHA-D-GALACTOPYRANURONIC ACID (ADAe)
1f: ALPHA-D-GALACTOPYRANURONIC ACID (ADAf)
1g: ALPHA-D-GALACTOPYRANURONIC ACID (ADAg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: BETA-D-GALACTOPYRANURONIC ACID (GTRa)
3b: BETA-D-GALACTOPYRANURONIC ACID (GTRb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADA
5
Ligand/Ion
ALPHA-D-GALACTOPYRANURONIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GTR
1
Ligand/Ion
BETA-D-GALACTOPYRANURONIC ACID
4
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
MRD
-1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AD4 (SOFTWARE)
10: AD5 (SOFTWARE)
11: AD6 (SOFTWARE)
12: AD7 (SOFTWARE)
13: AD8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:39 , GLU A:84 , CA A:202 , ADA A:207 , ADA A:208 , ADA A:210 , ADA A:211 , HOH A:364
binding site for residue CA A 201
02
AC2
SOFTWARE
GLN A:37 , GLU A:84 , ASP A:107 , CA A:201 , ADA A:207 , ADA A:210 , HOH A:350 , HOH A:370 , HOH A:417
binding site for residue CA A 202
03
AC3
SOFTWARE
ASP A:64 , GLU A:84 , ASP A:85 , ADA A:208 , ADA A:211 , HOH A:355 , HOH A:426
binding site for residue CA A 203
04
AC4
SOFTWARE
ASP A:81 , VAL A:82 , GLU A:104 , HOH A:372 , HOH A:379 , HOH A:382 , HOH A:486
binding site for residue CA A 204
05
AC5
SOFTWARE
LYS A:119 , TYR A:145 , GLU A:147 , PRO A:164 , SER A:186 , TYR A:193
binding site for residue MPD A 205
06
AC6
SOFTWARE
ASP A:107 , LYS A:130 , ARG A:133 , LYS A:160 , ADA A:206 , ADA A:207 , ADA A:210 , HOH A:303 , HOH A:310 , HOH A:343 , HOH A:350 , HOH A:353 , HOH A:446
binding site for residue GTR A 209
07
AC7
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:107 , GLN A:111 , ARG A:133 , ASN A:135 , GLY A:136 , CA A:201 , CA A:202 , ADA A:206 , ADA A:207 , ADA A:208 , GTR A:209 , ADA A:211 , HOH A:310 , HOH A:341 , HOH A:364 , HOH A:370
binding site for residue ADA A 210
08
AC8
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:85 , GLN A:111 , ASN A:113 , ASN A:135 , CA A:201 , CA A:203 , ADA A:207 , ADA A:208 , ADA A:210 , HOH A:323 , HOH A:355 , HOH A:364 , HOH A:426 , HOH A:433 , HOH A:448 , HOH A:469 , HOH A:475 , HOH A:485 , HOH A:537
binding site for residue ADA A 211
09
AD4
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , ILE B:12 , TYR B:20 , HOH B:390
binding site for residue MPD B 205
10
AD5
SOFTWARE
ILE A:25 , ASN B:1 , TYR B:20 , MRD B:207 , HOH B:315 , HOH B:385
binding site for residue MPD B 206
11
AD6
SOFTWARE
ILE A:8 , ILE A:12 , TYR A:20 , HOH A:447 , ASN B:1 , MPD B:206
binding site for residue MRD B 207
12
AD7
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:85 , ASP A:107 , GLN A:111 , ASN A:113 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , LYS A:160 , CA A:201 , CA A:202 , CA A:203 , GTR A:209 , ADA A:210 , ADA A:211 , HOH A:303 , HOH A:310 , HOH A:323 , HOH A:327 , HOH A:341 , HOH A:343 , HOH A:350 , HOH A:353 , HOH A:355 , HOH A:364 , HOH A:370 , HOH A:426 , HOH A:433 , HOH A:446 , HOH A:448 , HOH A:469 , HOH A:475 , HOH A:537
binding site for Poly-Saccharide residues ADA A 206 through ADA A 208
13
AD8
SOFTWARE
ILE A:8 , ILE A:12 , TYR A:20 , GLU A:39 , GLU A:84 , ASP A:85 , LYS A:103 , ASP A:107 , GLN A:111 , ASN A:113 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , LYS A:160 , CA A:201 , CA A:202 , CA A:203 , ADA A:206 , ADA A:211 , HOH A:303 , HOH A:310 , HOH A:323 , HOH A:341 , HOH A:343 , HOH A:350 , HOH A:353 , HOH A:355 , HOH A:364 , HOH A:366 , HOH A:370 , HOH A:426 , HOH A:433 , HOH A:446 , HOH A:447 , HOH A:448 , HOH A:469 , HOH A:475 , HOH A:537 , ASN B:1 , GLU B:39 , GLU B:84 , ASP B:85 , ASP B:107 , GLN B:111 , ASN B:113 , LYS B:130 , ARG B:133 , ASN B:135 , GLY B:136 , LYS B:160 , CA B:201 , CA B:202 , CA B:203 , MPD B:206 , HOH B:311 , HOH B:312 , HOH B:334 , HOH B:336 , HOH B:347 , HOH B:349 , HOH B:359 , HOH B:371 , HOH B:379 , HOH B:395 , HOH B:400 , HOH B:406 , HOH B:409 , HOH B:429 , HOH B:469
binding site for Poly-Saccharide residues GTR B 208 through ADA B 210
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
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