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Biol. Unit 2
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Asym.Unit (171 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (84 KB)
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(1)
Title
:
C. BESCII FAMILY 3 PECTATE LYASE DOUBLE MUTANT K108A/D107N IN COMPLEX WITH TRIGALACTURONIC ACID
Authors
:
P. M. Alahuhta, V. V. Lunin
Date
:
25 Mar 15 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pl3, Parallel Beta-Helix, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alahuhta, L. E. Taylor, R. Brunecky, D. W. Sammond, W. Michener, M. W. Adams, M. E. Himmel, Y. J. Bomble, V. Lunin
The Catalytic Mechanism And Unique Low Ph Optimum Of Caldicellulosiruptor Bescii Family 3 Pectate Lyase.
Acta Crystallogr. , Sect. D V. 71 1946 2015
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: ALPHA-D-GALACTOPYRANURONIC ACID (ADAa)
1b: ALPHA-D-GALACTOPYRANURONIC ACID (ADAb)
1c: ALPHA-D-GALACTOPYRANURONIC ACID (ADAc)
1d: ALPHA-D-GALACTOPYRANURONIC ACID (ADAd)
1e: ALPHA-D-GALACTOPYRANURONIC ACID (ADAe)
1f: ALPHA-D-GALACTOPYRANURONIC ACID (ADAf)
1g: ALPHA-D-GALACTOPYRANURONIC ACID (ADAg)
1h: ALPHA-D-GALACTOPYRANURONIC ACID (ADAh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: BETA-D-GALACTOPYRANURONIC ACID (GTRa)
5a: IMIDAZOLE (IMDa)
5b: IMIDAZOLE (IMDb)
6a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
6b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
6c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
6d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
7a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
7b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADA
5
Ligand/Ion
ALPHA-D-GALACTOPYRANURONIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GTR
1
Ligand/Ion
BETA-D-GALACTOPYRANURONIC ACID
5
IMD
1
Ligand/Ion
IMIDAZOLE
6
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
7
MRD
-1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
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Sites
(14, 14)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AD2 (SOFTWARE)
04: AD3 (SOFTWARE)
05: AD4 (SOFTWARE)
06: AD5 (SOFTWARE)
07: AD6 (SOFTWARE)
08: AD7 (SOFTWARE)
09: AD8 (SOFTWARE)
10: AD9 (SOFTWARE)
11: AE1 (SOFTWARE)
12: AE2 (SOFTWARE)
13: AE3 (SOFTWARE)
14: AE5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , HOH A:438 , LEU B:6 , ILE B:12 , TYR B:20
binding site for residue MPD A 207
02
AC8
SOFTWARE
ILE A:8 , ILE A:12 , TYR A:20 , HOH A:442 , THR B:0 , ASN B:1 , GLY B:4
binding site for residue MRD A 208
03
AD2
SOFTWARE
ASN A:1 , LEU A:6 , ILE A:25 , HOH A:485 , TYR B:20 , HOH B:478
binding site for residue MPD B 201
04
AD3
SOFTWARE
GLN B:37 , GLU B:84 , ASN B:107 , CA B:203 , ADA B:210 , ADA B:213 , HOH B:360 , HOH B:401 , HOH B:413
binding site for residue CA B 202
05
AD4
SOFTWARE
GLU B:39 , GLU B:84 , CA B:202 , ADA B:210 , ADA B:211 , ADA B:213 , ADA B:214 , HOH B:343
binding site for residue CA B 203
06
AD5
SOFTWARE
ASP B:64 , GLU B:84 , ASP B:85 , ADA B:211 , ADA B:214 , HOH B:349 , HOH B:410
binding site for residue CA B 204
07
AD6
SOFTWARE
ASP B:81 , VAL B:82 , GLU B:104 , HOH B:376 , HOH B:377 , HOH B:388 , HOH B:502
binding site for residue CA B 205
08
AD7
SOFTWARE
LYS B:119 , GLU B:147 , TYR B:193 , HOH B:308
binding site for residue IMD B 206
09
AD8
SOFTWARE
THR A:139 , HOH A:475 , ASP B:148 , ASN B:172 , HOH B:315 , HOH B:366
binding site for residue MPD B 207
10
AD9
SOFTWARE
ASN B:107 , GLY B:129 , LYS B:130 , SER B:156 , GTR B:212 , HOH B:344
binding site for residue CL B 208
11
AE1
SOFTWARE
LYS A:103 , ASN B:107 , LYS B:130 , ARG B:133 , LYS B:160 , CL B:208 , ADA B:209 , ADA B:210 , ADA B:213 , HOH B:306 , HOH B:314 , HOH B:345 , HOH B:379 , HOH B:411
binding site for residue GTR B 212
12
AE2
SOFTWARE
LYS A:103 , GLU B:39 , GLU B:84 , ASN B:107 , GLN B:111 , ARG B:133 , ASN B:135 , GLY B:136 , CA B:202 , CA B:203 , ADA B:209 , ADA B:210 , ADA B:211 , GTR B:212 , ADA B:214 , HOH B:343 , HOH B:358 , HOH B:402 , HOH B:413 , HOH B:456
binding site for residue ADA B 213
13
AE3
SOFTWARE
HOH A:320 , GLU B:39 , GLU B:84 , ASP B:85 , GLN B:111 , ASN B:113 , ASN B:135 , CA B:203 , CA B:204 , ADA B:210 , ADA B:211 , ADA B:213 , HOH B:336 , HOH B:349 , HOH B:354 , HOH B:370 , HOH B:410 , HOH B:447 , HOH B:456
binding site for residue ADA B 214
14
AE5
SOFTWARE
GLU A:39 , ASP A:64 , GLU A:84 , ASP A:85 , LYS A:90 , LYS A:103 , ASN A:107 , GLN A:111 , ASN A:113 , GLY A:129 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , SER A:156 , LYS A:160 , CA A:201 , CA A:202 , CA A:203 , HOH A:302 , HOH A:310 , HOH A:320 , HOH A:321 , HOH A:331 , HOH A:336 , HOH A:338 , HOH A:340 , HOH A:341 , HOH A:360 , HOH A:361 , HOH A:369 , HOH A:372 , HOH A:375 , HOH A:383 , HOH A:385 , HOH A:388 , HOH A:396 , HOH A:424 , HOH A:434 , HOH A:457 , HOH A:490 , HOH A:492 , HOH A:498 , HOH A:527 , HOH A:534 , HOH A:557 , HOH A:571 , GLU B:39 , GLU B:84 , ASP B:85 , ASN B:107 , GLN B:111 , ASN B:113 , LYS B:130 , ARG B:133 , ASN B:135 , GLY B:136 , LYS B:160 , CA B:202 , CA B:203 , CA B:204 , CL B:208 , ADA B:214 , HOH B:306 , HOH B:314 , HOH B:336 , HOH B:343 , HOH B:345 , HOH B:349 , HOH B:354 , HOH B:358 , HOH B:360 , HOH B:370 , HOH B:379 , HOH B:402 , HOH B:410 , HOH B:411 , HOH B:413 , HOH B:415 , HOH B:447 , HOH B:456
binding site for Poly-Saccharide residues ADA B 209 through ADA B 211
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(0, 0)
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SCOP Domains
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CATH Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (171 KB)
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Header - Biol.Unit 1
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