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4YZQ
Biol. Unit 2
Info
Asym.Unit (89 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
C. BESCII FAMILY 3 PECTATE LYASE DOUBLE MUTANT K108A/Q111N IN COMPLEX WITH TRIGALACTURONIC ACID
Authors
:
P. M. Alahuhta, V. V. Lunin
Date
:
25 Mar 15 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pl3, Parallel Beta-Helix, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alahuhta, L. E. Taylor, R. Brunecky, D. W. Sammond, W. Michener, M. W. Adams, M. E. Himmel, Y. J. Bomble, V. Lunin
The Catalytic Mechanism And Unique Low Ph Optimum Of Caldicellulosiruptor Bescii Family 3 Pectate Lyase.
Acta Crystallogr. , Sect. D V. 71 1946 2015
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ALPHA-D-GALACTOPYRANURONIC ACID (ADAa)
1b: ALPHA-D-GALACTOPYRANURONIC ACID (ADAb)
1c: ALPHA-D-GALACTOPYRANURONIC ACID (ADAc)
1d: ALPHA-D-GALACTOPYRANURONIC ACID (ADAd)
1e: ALPHA-D-GALACTOPYRANURONIC ACID (ADAe)
1f: ALPHA-D-GALACTOPYRANURONIC ACID (ADAf)
1g: ALPHA-D-GALACTOPYRANURONIC ACID (ADAg)
1h: ALPHA-D-GALACTOPYRANURONIC ACID (ADAh)
1i: ALPHA-D-GALACTOPYRANURONIC ACID (ADAi)
1j: ALPHA-D-GALACTOPYRANURONIC ACID (ADAj)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: BETA-D-GALACTOPYRANURONIC ACID (GTRa)
3b: BETA-D-GALACTOPYRANURONIC ACID (GTRb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
4d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
4e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
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Label:
No.
Name
Count
Type
Full Name
1
ADA
5
Ligand/Ion
ALPHA-D-GALACTOPYRANURONIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GTR
1
Ligand/Ion
BETA-D-GALACTOPYRANURONIC ACID
4
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(12, 12)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AD2 (SOFTWARE)
04: AD3 (SOFTWARE)
05: AD4 (SOFTWARE)
06: AD5 (SOFTWARE)
07: AD6 (SOFTWARE)
08: AD7 (SOFTWARE)
09: AD8 (SOFTWARE)
10: AD9 (SOFTWARE)
11: AE1 (SOFTWARE)
12: AE3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
THR A:0 , ASN A:1 , LEU B:6 , ILE B:12 , TYR B:20 , HOH B:429
binding site for residue MPD A 206
02
AC7
SOFTWARE
LEU A:6 , ILE A:8 , ILE A:12 , TYR A:20 , HOH A:420 , ASN B:1
binding site for residue MPD A 207
03
AD2
SOFTWARE
GLN B:37 , GLU B:84 , ASP B:107 , CA B:202 , ADA B:208 , ADA B:211 , HOH B:382 , HOH B:389 , HOH B:404
binding site for residue CA B 201
04
AD3
SOFTWARE
GLU B:39 , GLU B:84 , CA B:201 , ADA B:208 , ADA B:209 , ADA B:211 , ADA B:212 , HOH B:330
binding site for residue CA B 202
05
AD4
SOFTWARE
ASP B:64 , GLU B:84 , ASP B:85 , ADA B:209 , ADA B:212 , HOH B:307 , HOH B:415
binding site for residue CA B 203
06
AD5
SOFTWARE
ASP B:81 , VAL B:82 , GLU B:104 , HOH B:324 , HOH B:359 , HOH B:362 , HOH B:480
binding site for residue CA B 204
07
AD6
SOFTWARE
ASN A:137 , THR A:139 , HOH A:454 , LYS B:121 , ASP B:148 , ASN B:172 , HOH B:375
binding site for residue MPD B 205
08
AD7
SOFTWARE
ASP B:81 , CYS B:116 , THR B:117 , LYS B:141 , HOH B:328 , HOH B:453
binding site for residue MPD B 206
09
AD8
SOFTWARE
LYS A:103 , ASP B:107 , LYS B:130 , ARG B:133 , LYS B:160 , ADA B:207 , ADA B:208 , ADA B:211 , HOH B:304 , HOH B:305 , HOH B:308 , HOH B:382 , HOH B:451
binding site for residue GTR B 210
10
AD9
SOFTWARE
LYS A:103 , GLU B:39 , GLU B:84 , ASP B:107 , ASN B:111 , ARG B:133 , ASN B:135 , GLY B:136 , CA B:201 , CA B:202 , ADA B:207 , ADA B:208 , ADA B:209 , GTR B:210 , ADA B:212 , HOH B:330 , HOH B:350 , HOH B:371 , HOH B:389 , HOH B:409 , HOH B:430
binding site for residue ADA B 211
11
AE1
SOFTWARE
HOH A:389 , GLU B:39 , GLU B:84 , ASP B:85 , ASN B:113 , ASN B:135 , CA B:202 , CA B:203 , ADA B:208 , ADA B:209 , ADA B:211 , HOH B:307 , HOH B:313 , HOH B:315 , HOH B:319 , HOH B:377 , HOH B:415 , HOH B:430 , HOH B:436
binding site for residue ADA B 212
12
AE3
SOFTWARE
LEU A:6 , ILE A:8 , ILE A:12 , TYR A:20 , GLU A:39 , LYS A:54 , GLU A:84 , ASP A:85 , LYS A:103 , ASP A:107 , ASN A:111 , ASN A:113 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , LYS A:160 , CA A:201 , CA A:202 , CA A:203 , GTR A:211 , ADA A:212 , ADA A:213 , HOH A:305 , HOH A:310 , HOH A:330 , HOH A:342 , HOH A:355 , HOH A:358 , HOH A:362 , HOH A:375 , HOH A:385 , HOH A:389 , HOH A:402 , HOH A:411 , HOH A:420 , HOH A:424 , HOH A:446 , ASN B:1 , GLU B:39 , GLU B:84 , ASP B:85 , ASP B:107 , ASN B:111 , ASN B:113 , LYS B:130 , ARG B:133 , ASN B:135 , GLY B:136 , LYS B:160 , CA B:201 , CA B:202 , CA B:203 , ADA B:211 , ADA B:212 , HOH B:304 , HOH B:305 , HOH B:307 , HOH B:308 , HOH B:313 , HOH B:315 , HOH B:319 , HOH B:330 , HOH B:377 , HOH B:382 , HOH B:393 , HOH B:409 , HOH B:415 , HOH B:422 , HOH B:430 , HOH B:451
binding site for Poly-Saccharide residues ADA B 207 through ADA B 209
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SAPs(SNPs)/Variants
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
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