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4YZA
Asym. Unit
Info
Asym.Unit (177 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
C. BESCII FAMILY 3 PECTATE LYASE DOUBLE MUTANT K108A/Q111A IN COMPLEX WITH TRIGALACTURONIC ACID
Authors
:
P. M. Alahuhta, V. V. Lunin
Date
:
24 Mar 15 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pl3, Parallel Beta-Helix, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alahuhta, L. E. Taylor, R. Brunecky, D. W. Sammond, W. Michener, M. W. Adams, M. E. Himmel, Y. J. Bomble, V. Lunin
The Catalytic Mechanism And Unique Low Ph Optimum Of Caldicellulosiruptor Bescii Family 3 Pectate Lyase.
Acta Crystallogr. , Sect. D V. 71 1946 2015
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Hetero Components
(7, 30)
Info
All Hetero Components
1a: ALPHA-D-GALACTOPYRANURONIC ACID (ADAa)
1b: ALPHA-D-GALACTOPYRANURONIC ACID (ADAb)
1c: ALPHA-D-GALACTOPYRANURONIC ACID (ADAc)
1d: ALPHA-D-GALACTOPYRANURONIC ACID (ADAd)
1e: ALPHA-D-GALACTOPYRANURONIC ACID (ADAe)
1f: ALPHA-D-GALACTOPYRANURONIC ACID (ADAf)
1g: ALPHA-D-GALACTOPYRANURONIC ACID (ADAg)
1h: ALPHA-D-GALACTOPYRANURONIC ACID (ADAh)
1i: ALPHA-D-GALACTOPYRANURONIC ACID (ADAi)
1j: ALPHA-D-GALACTOPYRANURONIC ACID (ADAj)
1k: ALPHA-D-GALACTOPYRANURONIC ACID (ADAk)
1l: ALPHA-D-GALACTOPYRANURONIC ACID (ADAl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
3a: BETA-D-GALACTOPYRANURONIC ACID (GTRa)
3b: BETA-D-GALACTOPYRANURONIC ACID (GTRb)
4a: IMIDAZOLE (IMDa)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
6a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
7a: ALPHA-D-TALOPYRANURONIC ACID (X1Xa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADA
12
Ligand/Ion
ALPHA-D-GALACTOPYRANURONIC ACID
2
CA
9
Ligand/Ion
CALCIUM ION
3
GTR
2
Ligand/Ion
BETA-D-GALACTOPYRANURONIC ACID
4
IMD
1
Ligand/Ion
IMIDAZOLE
5
MPD
4
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
7
X1X
1
Ligand/Ion
ALPHA-D-TALOPYRANURONIC ACID
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:81 , VAL A:82 , GLU A:104 , HOH A:365 , HOH A:376 , HOH A:417 , HOH A:510
binding site for residue CA A 201
02
AC2
SOFTWARE
ASP A:64 , GLU A:84 , ASP A:85 , ADA A:212 , ADA A:215 , ADA A:218 , HOH A:345 , HOH A:401
binding site for residue CA A 202
03
AC3
SOFTWARE
GLU A:39 , GLU A:84 , CA A:204 , ADA A:211 , ADA A:212 , ADA A:214 , ADA A:215 , ADA A:217 , ADA A:218 , HOH A:339
binding site for residue CA A 203
04
AC4
SOFTWARE
GLN A:37 , GLU A:84 , ASP A:107 , CA A:203 , ADA A:211 , ADA A:214 , ADA A:217 , HOH A:392 , HOH A:412 , HOH A:426
binding site for residue CA A 204
05
AC5
SOFTWARE
X1X A:210 , ADA A:211 , ADA A:213 , ADA A:214 , GTR A:216 , ADA A:217 , HOH A:439 , HOH A:521 , HOH A:526
binding site for residue CA A 205
06
AC6
SOFTWARE
LYS A:119 , TYR A:145 , GLU A:147 , SER A:186 , GLN A:189 , TYR A:193 , HOH A:338
binding site for residue MPD A 206
07
AC7
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , LEU B:6 , ILE B:12 , TYR B:20 , HOH B:465
binding site for residue MPD A 207
08
AC8
SOFTWARE
ILE A:8 , ILE A:12 , TYR A:20 , HOH A:428 , ASN B:1 , GLY B:4
binding site for residue MRD A 208
09
AC9
SOFTWARE
VAL A:154 , LYS A:155 , ASN A:177 , HOH A:306
binding site for residue IMD A 209
10
AD1
SOFTWARE
ASP A:107 , LYS A:130 , ARG A:133 , LYS A:160 , CA A:205 , ADA A:211 , ADA A:213 , ADA A:214 , GTR A:216 , ADA A:217 , HOH A:337 , HOH A:350 , HOH A:394 , HOH A:415 , HOH A:421
binding site for residue X1X A 210
11
AD2
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:107 , ARG A:133 , ASN A:135 , GLY A:136 , CA A:203 , CA A:204 , CA A:205 , X1X A:210 , ADA A:212 , ADA A:213 , ADA A:214 , ADA A:215 , GTR A:216 , ADA A:217 , ADA A:218 , HOH A:339 , HOH A:392 , HOH A:434 , HOH A:439 , HOH A:472
binding site for residue ADA A 211
12
AD3
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:85 , ASN A:113 , ASN A:135 , CA A:202 , CA A:203 , ADA A:211 , ADA A:214 , ADA A:215 , ADA A:217 , ADA A:218 , HOH A:316 , HOH A:318 , HOH A:339 , HOH A:345 , HOH A:401 , HOH A:456 , HOH A:463 , HOH A:474
binding site for residue ADA A 212
13
AD4
SOFTWARE
LYS A:54 , ASP A:107 , LYS A:130 , ARG A:133 , LYS A:160 , CA A:205 , X1X A:210 , ADA A:211 , ADA A:213 , ADA A:214 , ADA A:217 , HOH A:325 , HOH A:337 , HOH A:350 , HOH A:415 , HOH A:421 , HOH A:426
binding site for residue GTR A 216
14
AD5
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:107 , ARG A:133 , ASN A:135 , GLY A:136 , CA A:203 , CA A:204 , CA A:205 , X1X A:210 , ADA A:211 , ADA A:212 , ADA A:213 , ADA A:214 , ADA A:215 , GTR A:216 , ADA A:218 , HOH A:339 , HOH A:392 , HOH A:434 , HOH A:439 , HOH A:472
binding site for residue ADA A 217
15
AD6
SOFTWARE
GLU A:39 , GLU A:84 , ASP A:85 , ASN A:113 , ASN A:135 , CA A:202 , CA A:203 , ADA A:211 , ADA A:212 , ADA A:214 , ADA A:215 , ADA A:217 , HOH A:316 , HOH A:318 , HOH A:339 , HOH A:345 , HOH A:401 , HOH A:456 , HOH A:463 , HOH A:474
binding site for residue ADA A 218
16
AD7
SOFTWARE
ASN A:1 , LEU A:6 , HOH A:495 , ASN B:1 , TYR B:20 , HOH B:483
binding site for residue MPD B 201
17
AD8
SOFTWARE
ASP B:81 , VAL B:82 , GLU B:104 , HOH B:381 , HOH B:386 , HOH B:420 , HOH B:514
binding site for residue CA B 202
18
AD9
SOFTWARE
ASP B:64 , GLU B:84 , ASP B:85 , ADA B:209 , ADA B:212 , HOH B:344 , HOH B:429
binding site for residue CA B 203
19
AE1
SOFTWARE
GLU B:39 , GLU B:84 , CA B:205 , ADA B:208 , ADA B:209 , ADA B:211 , ADA B:212 , HOH B:347
binding site for residue CA B 204
20
AE2
SOFTWARE
GLN B:37 , GLU B:84 , ASP B:107 , CA B:204 , ADA B:208 , ADA B:211 , HOH B:395 , HOH B:426 , HOH B:434
binding site for residue CA B 205
21
AE3
SOFTWARE
THR A:139 , ASN B:122 , ASP B:148 , ASN B:172 , HOH B:322 , HOH B:389
binding site for residue MPD B 206
22
AE4
SOFTWARE
LYS A:103 , ASP B:107 , LYS B:130 , ARG B:133 , LYS B:160 , ADA B:207 , ADA B:208 , ADA B:211 , HOH B:318 , HOH B:370 , HOH B:388 , HOH B:395 , HOH B:419 , HOH B:437 , HOH B:501
binding site for residue GTR B 210
23
AE5
SOFTWARE
LYS A:103 , GLU B:39 , GLU B:84 , ASP B:107 , ARG B:133 , ASN B:135 , GLY B:136 , CA B:204 , CA B:205 , ADA B:207 , ADA B:208 , ADA B:209 , GTR B:210 , ADA B:212 , HOH B:347 , HOH B:375 , HOH B:426 , HOH B:491
binding site for residue ADA B 211
24
AE6
SOFTWARE
HOH A:329 , GLU B:39 , GLU B:84 , ASP B:85 , ASN B:113 , ASN B:135 , CA B:203 , CA B:204 , ADA B:208 , ADA B:209 , ADA B:211 , HOH B:340 , HOH B:343 , HOH B:344 , HOH B:345 , HOH B:347 , HOH B:409 , HOH B:416 , HOH B:429 , HOH B:491
binding site for residue ADA B 212
25
AE7
SOFTWARE
GLU A:39 , LYS A:54 , GLU A:84 , ASP A:85 , ASP A:107 , ASN A:113 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , LYS A:160 , CA A:202 , CA A:203 , CA A:204 , CA A:205 , X1X A:210 , ADA A:211 , ADA A:212 , GTR A:216 , ADA A:217 , ADA A:218 , HOH A:316 , HOH A:318 , HOH A:325 , HOH A:337 , HOH A:339 , HOH A:345 , HOH A:350 , HOH A:392 , HOH A:394 , HOH A:401 , HOH A:415 , HOH A:421 , HOH A:426 , HOH A:434 , HOH A:439 , HOH A:456 , HOH A:463 , HOH A:472 , HOH A:474
binding site for Poly-Saccharide residues ADA A 213 through ADA A 215
26
AE8
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , ILE A:8 , ILE A:12 , TYR A:20 , GLU A:39 , GLU A:84 , ASP A:85 , LYS A:103 , ASP A:107 , ASN A:113 , ARG A:133 , ASN A:135 , GLY A:136 , VAL A:154 , LYS A:155 , ASN A:177 , CA A:202 , CA A:203 , CA A:204 , CA A:205 , X1X A:210 , ADA A:211 , ADA A:212 , ADA A:213 , GTR A:216 , ADA A:217 , ADA A:218 , HOH A:306 , HOH A:316 , HOH A:318 , HOH A:329 , HOH A:339 , HOH A:345 , HOH A:392 , HOH A:401 , HOH A:428 , HOH A:434 , HOH A:439 , HOH A:456 , HOH A:463 , HOH A:472 , HOH A:474 , ASN B:1 , GLY B:4 , LEU B:6 , ILE B:12 , TYR B:20 , GLU B:39 , GLU B:84 , ASP B:85 , ASP B:107 , ASN B:113 , LYS B:130 , ARG B:133 , ASN B:135 , GLY B:136 , LYS B:160 , CA B:203 , CA B:204 , CA B:205 , GTR B:210 , ADA B:211 , ADA B:212 , HOH B:318 , HOH B:340 , HOH B:343 , HOH B:344 , HOH B:345 , HOH B:347 , HOH B:370 , HOH B:375 , HOH B:388 , HOH B:395 , HOH B:409 , HOH B:416 , HOH B:419 , HOH B:426 , HOH B:429 , HOH B:437 , HOH B:460 , HOH B:465 , HOH B:491
binding site for Poly-Saccharide residues ADA B 207 through ADA B 209
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SAPs(SNPs)/Variants
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