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4YZ5
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE NANC, IN COMPLEX WITH 3-SIALYLLACTOSE
Authors
:
P. Lukacik, C. D. Owen, J. A. Potter, G. L. Taylor, M. A. Walsh
Date
:
24 Mar 15 (Deposition) - 23 Sep 15 (Release) - 25 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sialidase, Neuraminidase, Beta-Propeller, Cbm40, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
C. D. Owen, P. Lukacik, J. A. Potter, O. Sleator, G. L. Taylor, M. A. Wals
Streptococcus Pneumoniae Nanc: Structural Insights Into The Specificity And Mechanism Of A Sialidase That Produces A Sialidase Inhibitor.
J. Biol. Chem. V. 290 27736 2015
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANa)
1b: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANb)
2a: 5-(ACETYLAMINO)-3,5-DIDEOXYNON-2-U... (SLTa)
2b: 5-(ACETYLAMINO)-3,5-DIDEOXYNON-2-U... (SLTb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
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No.
Name
Count
Type
Full Name
1
DAN
2
Ligand/Ion
2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
2
SLT
2
Ligand/Ion
5-(ACETYLAMINO)-3,5-DIDEOXYNON-2-ULOPYRANONOSYL-(2->3)-BETA-D-LYXO-HEXOPYRANOSYL-(1->4)HEXOPYRANOSE
3
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:128 , PHE A:149 , ARG A:151 , GLU A:159 , ARG A:161 , ARG A:237 , PHE A:243 , HOH A:1150 , HOH A:1247
binding site for residue SLT A 1001
02
AC2
SOFTWARE
ARG A:290 , ILE A:291 , ARG A:309 , ASP A:315 , ILE A:371 , ASP A:372 , ASP A:388 , PHE A:396 , TYR A:553 , SER A:582 , ARG A:600 , ARG A:662 , TYR A:695 , HOH A:1109 , HOH A:1110 , HOH A:1359
binding site for residue DAN A 1002
03
AC3
SOFTWARE
ARG A:360 , ASN A:509 , SER A:514 , ASN A:719 , HOH A:1134
binding site for residue SO4 A 1003
04
AC4
SOFTWARE
TYR A:181 , LYS A:182
binding site for residue SO4 A 1004
05
AC5
SOFTWARE
TYR A:460 , HIS A:485 , ASN A:657 , HIS A:664 , HOH A:1136 , HOH A:1360 , HOH A:1364 , HOH A:1377
binding site for residue SO4 A 1005
06
AC6
SOFTWARE
ASP A:422 , THR A:423 , ASP A:424 , ASN A:426 , HOH A:1209
binding site for residue SO4 A 1006
07
AC7
SOFTWARE
THR A:241 , ALA A:242 , PHE A:243 , GLY A:244 , HOH A:1293 , THR B:440 , ASN B:441 , ARG B:442
binding site for residue SO4 A 1007
08
AC8
SOFTWARE
LEU B:128 , PHE B:149 , ARG B:151 , GLU B:159 , ARG B:161 , ARG B:237 , PHE B:243 , HOH B:901 , HOH B:988 , HOH B:999
binding site for residue SLT B 801
09
AC9
SOFTWARE
ARG B:290 , ILE B:291 , ARG B:309 , ASP B:315 , ILE B:371 , ASP B:372 , ASP B:388 , PHE B:396 , TYR B:553 , SER B:582 , ARG B:600 , ARG B:662 , TYR B:695 , HOH B:1020 , HOH B:1057 , HOH B:1117 , HOH B:1176
binding site for residue DAN B 802
10
AD1
SOFTWARE
VAL B:357 , ARG B:360 , ASN B:509 , ASN B:719 , HOH B:1066
binding site for residue SO4 B 803
11
AD2
SOFTWARE
TYR B:181 , LYS B:182 , HIS B:275 , HOH B:1132 , HOH B:1154
binding site for residue SO4 B 804
12
AD3
SOFTWARE
TYR B:460 , HIS B:485 , HIS B:664 , SER B:689 , HOH B:1031 , HOH B:1120 , HOH B:1150
binding site for residue SO4 B 805
13
AD4
SOFTWARE
ASP B:422 , THR B:423 , ASP B:424 , ASN B:426 , HOH B:1155
binding site for residue SO4 B 806
14
AD5
SOFTWARE
ASN A:441 , ARG A:442 , HOH A:1259 , THR B:241 , PHE B:243 , HOH B:1182
binding site for residue SO4 B 807
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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CATH Domains
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Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (116 KB)
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