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4YZ0
Biol. Unit 1
Info
Asym.Unit (177 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
C. BESCII FAMILY 3 PECTATE LYASE DOUBLE MUTANT K108A/E39Q IN COMPLEX WITH TRIGALACTURONIC ACID
Authors
:
P. M. Alahuhta, V. V. Lunin
Date
:
24 Mar 15 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pl3, Parallel Beta-Helix, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alahuhta, L. E. Taylor, R. Brunecky, D. W. Sammond, W. Michener, M. W. Adams, M. E. Himmel, Y. J. Bomble, V. Lunin
The Catalytic Mechanism And Unique Low Ph Optimum Of Caldicellulosiruptor Bescii Family 3 Pectate Lyase.
Acta Crystallogr. , Sect. D V. 71 1946 2015
[
close entry info
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Hetero Components
(6, 13)
Info
All Hetero Components
1a: ALPHA-D-GALACTOPYRANURONIC ACID (ADAa)
1b: ALPHA-D-GALACTOPYRANURONIC ACID (ADAb)
1c: ALPHA-D-GALACTOPYRANURONIC ACID (ADAc)
1d: ALPHA-D-GALACTOPYRANURONIC ACID (ADAd)
1e: ALPHA-D-GALACTOPYRANURONIC ACID (ADAe)
1f: ALPHA-D-GALACTOPYRANURONIC ACID (ADAf)
1g: ALPHA-D-GALACTOPYRANURONIC ACID (ADAg)
1h: ALPHA-D-GALACTOPYRANURONIC ACID (ADAh)
1i: ALPHA-D-GALACTOPYRANURONIC ACID (ADAi)
1j: ALPHA-D-GALACTOPYRANURONIC ACID (ADAj)
1k: ALPHA-D-GALACTOPYRANURONIC ACID (ADAk)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: BETA-D-GALACTOPYRANURONIC ACID (GTRa)
3b: BETA-D-GALACTOPYRANURONIC ACID (GTRb)
4a: IMIDAZOLE (IMDa)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
6a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
6b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
6c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
6d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
6e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
7a: BETA-D-TALOPYRANURONIC ACID (X0Xa)
8a: ALPHA-D-TALOPYRANURONIC ACID (X1Xa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADA
4
Ligand/Ion
ALPHA-D-GALACTOPYRANURONIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GTR
1
Ligand/Ion
BETA-D-GALACTOPYRANURONIC ACID
4
IMD
1
Ligand/Ion
IMIDAZOLE
5
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
MRD
4
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
7
X0X
-1
Ligand/Ion
BETA-D-TALOPYRANURONIC ACID
8
X1X
1
Ligand/Ion
ALPHA-D-TALOPYRANURONIC ACID
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AE1 (SOFTWARE)
16: AE2 (SOFTWARE)
17: AE3 (SOFTWARE)
18: AE4 (SOFTWARE)
19: AE5 (SOFTWARE)
20: AE6 (SOFTWARE)
21: AE7 (SOFTWARE)
22: AE8 (SOFTWARE)
23: AE9 (SOFTWARE)
24: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:37 , GLN A:39 , GLU A:84 , ASP A:107 , CA A:202 , ADA A:213 , ADA A:216 , HOH A:399 , HOH A:428
binding site for residue CA A 201
02
AC2
SOFTWARE
GLN A:39 , GLU A:84 , CA A:201 , ADA A:213 , ADA A:214 , ADA A:216 , ADA A:217 , HOH A:349
binding site for residue CA A 202
03
AC3
SOFTWARE
ASP A:64 , GLU A:84 , ASP A:85 , ADA A:214 , ADA A:217 , HOH A:346 , HOH A:483
binding site for residue CA A 203
04
AC4
SOFTWARE
ASP A:81 , VAL A:82 , GLU A:104 , HOH A:372 , HOH A:392 , HOH A:423 , HOH A:497
binding site for residue CA A 204
05
AC5
SOFTWARE
ASN A:153 , VAL A:154 , LYS A:155 , ASN A:177 , HOH A:305 , HOH A:330
binding site for residue IMD A 205
06
AC6
SOFTWARE
LYS A:119 , TYR A:145 , GLU A:147 , PRO A:164 , SER A:186 , TYR A:193 , HOH A:347
binding site for residue MPD A 206
07
AC7
SOFTWARE
LYS A:141 , ASP A:162 , GLU A:167 , TRP A:169 , PHE A:184 , PRO A:185 , MRD A:208 , HOH A:301 , HOH A:309 , HOH A:322 , HOH A:323 , HOH A:336 , HOH A:363 , HOH A:516 , HOH A:520
binding site for residue MPD A 207
08
AC8
SOFTWARE
LYS A:141 , ASP A:162 , GLU A:167 , PHE A:184 , PRO A:185 , MPD A:207 , HOH A:301 , HOH A:309 , HOH A:322 , HOH A:323 , HOH A:336 , HOH A:341 , HOH A:363 , HOH A:520
binding site for residue MRD A 208
09
AC9
SOFTWARE
VAL A:5 , ILE A:57 , HOH A:357 , HOH A:440 , HOH A:498 , ADA B:209 , ADA B:212 , ADA B:215 , HOH B:336 , HOH B:360 , HOH B:535
binding site for residue MRD A 209
10
AD1
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , LEU B:6 , ILE B:12 , TYR B:20 , MPD B:205 , HOH B:433
binding site for residue MRD A 210
11
AD2
SOFTWARE
ILE A:8 , ILE A:12 , TYR A:20 , HOH A:441 , ASN B:1
binding site for residue MRD A 211
12
AD3
SOFTWARE
ASP A:107 , LYS A:130 , ARG A:133 , LYS A:160 , X1X A:212 , ADA A:213 , ADA A:216 , HOH A:326 , HOH A:387 , HOH A:428 , HOH A:493
binding site for residue GTR A 215
13
AD4
SOFTWARE
GLN A:39 , GLU A:84 , ASP A:107 , GLN A:111 , ARG A:133 , ASN A:135 , GLY A:136 , CA A:201 , CA A:202 , X1X A:212 , ADA A:213 , ADA A:214 , GTR A:215 , ADA A:217 , HOH A:326 , HOH A:328 , HOH A:428 , HOH A:445
binding site for residue ADA A 216
14
AD5
SOFTWARE
GLN A:39 , GLU A:84 , ASP A:85 , GLN A:111 , ASN A:113 , ASN A:135 , CA A:202 , CA A:203 , ADA A:213 , ADA A:214 , ADA A:216 , HOH A:317 , HOH A:333 , HOH A:343 , HOH A:346 , HOH A:439 , HOH A:483
binding site for residue ADA A 217
15
AE1
SOFTWARE
LEU A:6 , ILE A:25 , MRD A:210 , HOH A:500 , TYR B:20 , HOH B:486
binding site for residue MPD B 205
16
AE2
SOFTWARE
ASN A:137 , THR A:139 , HOH A:479 , ASN B:122 , ASP B:148 , ASN B:172 , HOH B:313 , HOH B:416
binding site for residue MRD B 206
17
AE3
SOFTWARE
LYS A:103 , ASP B:107 , LYS B:130 , ARG B:133 , LYS B:160 , ADA B:208 , ADA B:210 , ADA B:211 , GTR B:213 , ADA B:214 , HOH B:310 , HOH B:312 , HOH B:345
binding site for residue X0X B 207
18
AE4
SOFTWARE
LYS A:103 , HOH A:321 , GLN B:39 , GLU B:84 , ASP B:107 , GLN B:111 , ARG B:133 , ASN B:135 , GLY B:136 , CA B:201 , CA B:202 , X0X B:207 , ADA B:209 , ADA B:210 , ADA B:211 , ADA B:212 , GTR B:213 , ADA B:214 , ADA B:215 , HOH B:312 , HOH B:352 , HOH B:424 , HOH B:443
binding site for residue ADA B 208
19
AE5
SOFTWARE
MRD A:209 , GLN B:39 , GLU B:84 , ASP B:85 , GLN B:111 , ASN B:113 , ASN B:135 , CA B:202 , CA B:203 , ADA B:208 , ADA B:211 , ADA B:212 , ADA B:214 , ADA B:215 , HOH B:319 , HOH B:336 , HOH B:354 , HOH B:355 , HOH B:360 , HOH B:387 , HOH B:418 , HOH B:484
binding site for residue ADA B 209
20
AE6
SOFTWARE
LYS A:103 , ASP B:107 , LYS B:130 , ARG B:133 , LYS B:160 , X0X B:207 , ADA B:208 , ADA B:210 , ADA B:211 , ADA B:214 , HOH B:310 , HOH B:312 , HOH B:345
binding site for residue GTR B 213
21
AE7
SOFTWARE
LYS A:103 , HOH A:321 , GLN B:39 , GLU B:84 , ASP B:107 , GLN B:111 , ARG B:133 , ASN B:135 , GLY B:136 , CA B:201 , CA B:202 , X0X B:207 , ADA B:208 , ADA B:209 , ADA B:210 , ADA B:211 , ADA B:212 , GTR B:213 , ADA B:215 , HOH B:312 , HOH B:352 , HOH B:424 , HOH B:443
binding site for residue ADA B 214
22
AE8
SOFTWARE
MRD A:209 , GLN B:39 , GLU B:84 , ASP B:85 , GLN B:111 , ASN B:113 , ASN B:135 , CA B:202 , CA B:203 , ADA B:208 , ADA B:209 , ADA B:211 , ADA B:212 , ADA B:214 , HOH B:319 , HOH B:336 , HOH B:354 , HOH B:355 , HOH B:360 , HOH B:387 , HOH B:418 , HOH B:484
binding site for residue ADA B 215
23
AE9
SOFTWARE
GLN A:39 , GLU A:84 , ASP A:85 , ASP A:107 , GLN A:111 , ASN A:113 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , LYS A:160 , CA A:201 , CA A:202 , CA A:203 , GTR A:215 , ADA A:216 , ADA A:217 , HOH A:314 , HOH A:317 , HOH A:326 , HOH A:328 , HOH A:333 , HOH A:343 , HOH A:346 , HOH A:387 , HOH A:439 , HOH A:445 , HOH A:483 , HOH A:504
binding site for Poly-Saccharide residues X1X A 212 through ADA A 214
24
AF1
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , ILE A:8 , ILE A:12 , TYR A:20 , GLN A:39 , GLU A:84 , ASP A:85 , LYS A:103 , ASP A:107 , GLN A:111 , ASN A:113 , LYS A:130 , ARG A:133 , ASN A:135 , GLY A:136 , LYS A:160 , CA A:201 , CA A:202 , CA A:203 , MRD A:209 , GTR A:215 , ADA A:216 , ADA A:217 , HOH A:314 , HOH A:317 , HOH A:321 , HOH A:326 , HOH A:328 , HOH A:333 , HOH A:343 , HOH A:346 , HOH A:387 , HOH A:439 , HOH A:441 , HOH A:445 , HOH A:483 , HOH A:504 , ASN B:1 , LEU B:6 , ILE B:12 , TYR B:20 , GLN B:39 , GLU B:84 , ASP B:85 , ASP B:107 , GLN B:111 , ASN B:113 , LYS B:130 , ARG B:133 , ASN B:135 , GLY B:136 , LYS B:160 , CA B:201 , CA B:202 , CA B:203 , MPD B:205 , X0X B:207 , ADA B:208 , ADA B:209 , ADA B:215 , HOH B:310 , HOH B:312 , HOH B:319 , HOH B:336 , HOH B:345 , HOH B:352 , HOH B:354 , HOH B:355 , HOH B:360 , HOH B:387 , HOH B:391 , HOH B:418 , HOH B:424 , HOH B:433 , HOH B:443 , HOH B:484 , HOH B:485
binding site for Poly-Saccharide residues ADA B 210 through ADA B 212
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