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4YW7
Asym. Unit
Info
Asym.Unit (346 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 10 (27 KB)
Biol.Unit 11 (26 KB)
Biol.Unit 12 (28 KB)
Biol.Unit 13 (27 KB)
Biol.Unit 14 (27 KB)
Biol.Unit 15 (28 KB)
Biol.Unit 16 (27 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (51 KB)
Biol.Unit 5 (27 KB)
Biol.Unit 6 (27 KB)
Biol.Unit 7 (27 KB)
Biol.Unit 8 (27 KB)
Biol.Unit 9 (31 KB)
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Title
:
STRUCTURAL INSIGHT INTO DIVALENT GALACTOSIDE BINDING TO PSEUDOMONAS AERUGINOSA LECTIN LECA
Authors
:
R. Visini, X. Jin, G. Michaud, M. Bergmann, E. Gillon, A. Imberty, A. Sto T. Darbre, R. Pieters, J. -L. Reymond
Date
:
20 Mar 15 (Deposition) - 09 Sep 15 (Release) - 02 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C,M (1x)
Biol. Unit 4: D,I (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: M (1x)
Biol. Unit 14: N (1x)
Biol. Unit 15: O (1x)
Biol. Unit 16: P (1x)
Keywords
:
Galactosides, Lectins, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Visini, X. Jin, M. Bergmann, G. Michaud, F. Pertici, O. Fu, A. Pukin, T. R. Branson, D. M. Thies-Weesie, J. Kemmink, E. Gillon, A. Imberty, A. Stocker, T. Darbre, R. J. Pieters, J. L. Reymond
Structural Insight Into Multivalent Galactoside Binding To Pseudomonas Aeruginosa Lectin Leca.
Acs Chem. Biol. V. 10 2455 2015
[
close entry info
]
Hetero Components
(3, 30)
Info
All Hetero Components
1a: (2R,3R,4S,5R,6R,2'R,3'R,4'S,5'R,6'... (4J0a)
1b: (2R,3R,4S,5R,6R,2'R,3'R,4'S,5'R,6'... (4J0b)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
3e: BETA-D-GALACTOSE (GALe)
3f: BETA-D-GALACTOSE (GALf)
3g: BETA-D-GALACTOSE (GALg)
3h: BETA-D-GALACTOSE (GALh)
3i: BETA-D-GALACTOSE (GALi)
3j: BETA-D-GALACTOSE (GALj)
3k: BETA-D-GALACTOSE (GALk)
3l: BETA-D-GALACTOSE (GALl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4J0
2
Ligand/Ion
(2R,3R,4S,5R,6R,2'R,3'R,4'S,5'R,6'R)-2,2'-([(2R,3R,4S,5S,6S)-3,4-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2,5-DIYL]BIS{1H-1,2,3-TRIAZOLE-1,4-DIYL[(2S,3R,4S,5S,6S)-3,4-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2,5-DIYL]-1H-1,2,3-TRIAZOLE-1,4-DIYLPROPANE-3,1-DIYLOXY})BIS[6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL]
2
CA
16
Ligand/Ion
CALCIUM ION
3
GAL
12
Ligand/Ion
BETA-D-GALACTOSE
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:36 , ASP A:100 , THR A:104 , ASN A:107 , ASN A:108 , GAL A:901
binding site for residue CA A 900
02
AC2
SOFTWARE
TYR A:36 , HIS A:50 , GLN A:53 , ASP A:100 , VAL A:101 , THR A:104 , ASN A:107 , CA A:900 , HOH A:1002 , HOH A:1066 , HOH A:1012 , 4J0 C:201
binding site for residue GAL A 901
03
AC3
SOFTWARE
TYR B:36 , ASP B:100 , THR B:104 , ASN B:107 , ASN B:108 , GAL B:202
binding site for residue CA B 201
04
AC4
SOFTWARE
TYR B:36 , HIS B:50 , GLN B:53 , ASP B:100 , THR B:104 , ASN B:107 , CA B:201 , HOH B:328 , HOH B:366 , HOH B:375
binding site for residue GAL B 202
05
AC5
SOFTWARE
GLY A:103 , THR A:104 , GAL A:901 , TYR C:36 , PRO C:38 , THR C:39 , HIS C:50 , GLN C:53 , ASP C:100 , VAL C:101 , THR C:104 , ASN C:107 , CA C:202 , HOH C:301 , HOH C:325 , HOH C:338 , HOH C:303 , HOH C:356 , HOH C:357 , HOH C:305 , HOH C:381 , TYR M:36 , HIS M:50 , ASP M:100 , VAL M:101 , THR M:104 , ASN M:107 , CA M:900 , HOH M:1017
binding site for residue 4J0 C 201
06
AC6
SOFTWARE
TYR C:36 , ASP C:100 , THR C:104 , ASN C:107 , ASN C:108 , 4J0 C:201
binding site for residue CA C 202
07
AC7
SOFTWARE
TYR D:36 , ASP D:100 , THR D:104 , ASN D:107 , ASN D:108 , GAL D:202
binding site for residue CA D 201
08
AC8
SOFTWARE
TYR D:36 , HIS D:50 , GLN D:53 , ASP D:100 , VAL D:101 , THR D:104 , ASN D:107 , CA D:201 , HOH D:341 , HOH D:354 , HOH D:374 , HOH D:376
binding site for residue GAL D 202
09
AC9
SOFTWARE
TYR E:36 , ASP E:100 , THR E:104 , ASN E:107 , ASN E:108 , GAL E:901
binding site for residue CA E 900
10
AD1
SOFTWARE
TYR E:36 , HIS E:50 , GLN E:53 , ASP E:100 , THR E:104 , ASN E:107 , CA E:900 , HOH E:1027 , HOH E:1069 , HOH E:1070 , HOH E:1073
binding site for residue GAL E 901
11
AD2
SOFTWARE
TYR F:36 , ASP F:100 , THR F:104 , ASN F:107 , ASN F:108 , GAL F:901
binding site for residue CA F 900
12
AD3
SOFTWARE
TYR F:36 , HIS F:50 , GLN F:53 , ASP F:100 , VAL F:101 , THR F:104 , ASN F:107 , CA F:900 , HOH F:1068 , HOH F:1019 , 4J0 I:202
binding site for residue GAL F 901
13
AD4
SOFTWARE
TYR G:36 , ASP G:100 , THR G:104 , ASN G:107 , ASN G:108 , GAL G:901
binding site for residue CA G 900
14
AD5
SOFTWARE
TYR G:36 , HIS G:50 , GLN G:53 , ASP G:100 , THR G:104 , ASN G:107 , CA G:900 , HOH G:1053 , HOH G:1056 , HOH G:1066
binding site for residue GAL G 901
15
AD6
SOFTWARE
TYR H:36 , ASP H:100 , THR H:104 , ASN H:107 , ASN H:108 , GAL H:901
binding site for residue CA H 900
16
AD7
SOFTWARE
TYR H:36 , HIS H:50 , GLN H:53 , ASP H:100 , THR H:104 , ASN H:107 , CA H:900 , HOH H:1042 , HOH H:1065 , HOH H:1069
binding site for residue GAL H 901
17
AD8
SOFTWARE
TYR I:36 , ASP I:100 , THR I:104 , ASN I:107 , ASN I:108 , 4J0 I:202
binding site for residue CA I 201
18
AD9
SOFTWARE
TYR J:36 , ASP J:100 , THR J:104 , ASN J:107 , ASN J:108 , GAL J:901
binding site for residue CA J 900
19
AE1
SOFTWARE
TYR J:36 , HIS J:50 , GLN J:53 , ASP J:100 , THR J:104 , ASN J:107 , CA J:900 , HOH J:1066 , HOH J:1073 , HOH J:1085
binding site for residue GAL J 901
20
AE2
SOFTWARE
TYR K:36 , ASP K:100 , THR K:104 , ASN K:107 , ASN K:108 , GAL K:901
binding site for residue CA K 900
21
AE3
SOFTWARE
TYR K:36 , HIS K:50 , GLN K:53 , ASP K:100 , THR K:104 , ASN K:107 , CA K:900 , HOH K:1048 , HOH K:1053 , HOH K:1061 , HOH K:1066 , HOH K:1067
binding site for residue GAL K 901
22
AE4
SOFTWARE
TYR L:36 , ASP L:100 , THR L:104 , ASN L:107 , ASN L:108 , GAL L:901
binding site for residue CA L 900
23
AE5
SOFTWARE
TYR L:36 , HIS L:50 , GLN L:53 , ASP L:100 , THR L:104 , ASN L:107 , CA L:900 , HOH L:1060 , HOH L:1061 , HOH L:1074 , HOH L:1085
binding site for residue GAL L 901
24
AE6
SOFTWARE
4J0 C:201 , TYR M:36 , ASP M:100 , THR M:104 , ASN M:107 , ASN M:108
binding site for residue CA M 900
25
AE7
SOFTWARE
TYR N:36 , ASP N:100 , THR N:104 , ASN N:107 , ASN N:108 , GAL N:901
binding site for residue CA N 900
26
AE8
SOFTWARE
TYR N:36 , HIS N:50 , GLN N:53 , ASP N:100 , THR N:104 , ASN N:107 , CA N:900 , HOH N:1043 , HOH N:1062 , HOH N:1064
binding site for residue GAL N 901
27
AE9
SOFTWARE
TYR O:36 , ASP O:100 , THR O:104 , ASN O:107 , ASN O:108 , GAL O:901
binding site for residue CA O 900
28
AF1
SOFTWARE
TYR O:36 , HIS O:50 , GLN O:53 , ASP O:100 , THR O:104 , ASN O:107 , CA O:900 , HOH O:1055 , HOH O:1057 , HOH O:1061 , HOH O:1075
binding site for residue GAL O 901
29
AF2
SOFTWARE
TYR P:36 , ASP P:100 , THR P:104 , ASN P:107 , ASN P:108 , 4J0 I:202
binding site for residue CA P 201
30
AF3
SOFTWARE
GLY F:103 , THR F:104 , GAL F:901 , TYR I:36 , HIS I:50 , ASP I:100 , THR I:104 , ASN I:107 , CA I:201 , HOH I:1080 , TYR P:36 , PRO P:38 , THR P:39 , HIS P:50 , GLN P:53 , ASP P:100 , VAL P:101 , THR P:104 , ASN P:107 , CA P:201 , HOH I:1138 , HOH I:1139 , HOH I:1140 , HOH I:1141 , HOH I:1142 , HOH I:1143 , HOH P:379 , HOH I:1034 , HOH I:1144 , HOH I:1145
binding site for residue 4J0 I 202
[
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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