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4YV9
Asym. Unit
Info
Asym.Unit (419 KB)
Biol.Unit 1 (205 KB)
Biol.Unit 2 (205 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF STREPTOCOCCUS DYSGALACTIAE SHP PHEROMONE RECEPTOR RGG2
Authors
:
M. B. Neiditch, V. Parashar
Date
:
19 Mar 15 (Deposition) - 08 Apr 15 (Release) - 06 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Dna Binding, Pheromone Binding, Repeat Domain, Quorum Sensing, Dna Binding Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Parashar, C. Aggarwal, M. J. Federle, M. B. Neiditch
Rgg Protein Structure-Function And Inhibition By Cyclic Peptide Compounds.
Proc. Natl. Acad. Sci. Usa V. 112 5177 2015
[
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Hetero Components
(8, 61)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
1c: ALPHA-AMINOBUTYRIC ACID (ABAc)
1d: ALPHA-AMINOBUTYRIC ACID (ABAd)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
2b: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTb)
2c: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTc)
2d: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTd)
3a: D-ALANINE (DALa)
3b: D-ALANINE (DALb)
3c: D-ALANINE (DALc)
3d: D-ALANINE (DALd)
4a: N-METHYLLEUCINE (MLEa)
4b: N-METHYLLEUCINE (MLEb)
4c: N-METHYLLEUCINE (MLEc)
4d: N-METHYLLEUCINE (MLEd)
4e: N-METHYLLEUCINE (MLEe)
4f: N-METHYLLEUCINE (MLEf)
4g: N-METHYLLEUCINE (MLEg)
4h: N-METHYLLEUCINE (MLEh)
4i: N-METHYLLEUCINE (MLEi)
4j: N-METHYLLEUCINE (MLEj)
4k: N-METHYLLEUCINE (MLEk)
4l: N-METHYLLEUCINE (MLEl)
4m: N-METHYLLEUCINE (MLEm)
4n: N-METHYLLEUCINE (MLEn)
4o: N-METHYLLEUCINE (MLEo)
4p: N-METHYLLEUCINE (MLEp)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
6a: N-METHYLVALINE (MVAa)
6b: N-METHYLVALINE (MVAb)
6c: N-METHYLVALINE (MVAc)
6d: N-METHYLVALINE (MVAd)
7a: SARCOSINE (SARa)
7b: SARCOSINE (SARb)
7c: SARCOSINE (SARc)
7d: SARCOSINE (SARd)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
8g: SULFATE ION (SO4g)
8h: SULFATE ION (SO4h)
8i: SULFATE ION (SO4i)
8j: SULFATE ION (SO4j)
8k: SULFATE ION (SO4k)
8l: SULFATE ION (SO4l)
8m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
4
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
4
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
DAL
4
Mod. Amino Acid
D-ALANINE
4
MLE
16
Mod. Amino Acid
N-METHYLLEUCINE
5
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
6
MVA
4
Mod. Amino Acid
N-METHYLVALINE
7
SAR
4
Mod. Amino Acid
SARCOSINE
8
SO4
13
Ligand/Ion
SULFATE ION
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:255 , TYR A:263 , GLN B:32 , SER B:41
binding site for residue SO4 A 301
02
AC2
SOFTWARE
ASN A:156 , TYR A:157 , TYR A:198 , HOH A:408 , HOH A:431 , HOH A:473 , SO4 D:304
binding site for residue SO4 A 302
03
AC3
SOFTWARE
SER A:44 , CYS A:45 , SER A:46 , LEU B:5 , PHE B:36 , ILE B:43
binding site for residue SO4 A 303
04
AC4
SOFTWARE
HIS A:101
binding site for residue SO4 A 304
05
AC5
SOFTWARE
ARG B:13 , GLN B:14 , HOH B:408
binding site for residue SO4 B 301
06
AC6
SOFTWARE
HIS B:27 , SER B:46 , ARG B:47 , ASN B:50
binding site for residue SO4 B 302
07
AC7
SOFTWARE
THR B:169 , TYR B:206 , LYS B:210 , HIS C:231 , LYS C:235 , HOH C:402 , HOH C:435
binding site for residue SO4 C 301
08
AC8
SOFTWARE
HIS C:101 , HOH C:429 , HOH C:499
binding site for residue SO4 C 302
09
AC9
SOFTWARE
ARG C:79 , ASP C:98 , TYR C:99 , HOH C:429
binding site for residue SO4 C 303
10
AD1
SOFTWARE
ARG D:13 , GLN D:14 , HOH D:403
binding site for residue SO4 D 301
11
AD2
SOFTWARE
TYR C:263 , LYS C:267 , SER D:31 , SER D:34 , ARG D:38
binding site for residue SO4 D 302
12
AD3
SOFTWARE
GLN D:32 , ARG D:35
binding site for residue SO4 D 303
13
AD4
SOFTWARE
SO4 A:302 , HOH A:408 , HOH A:410 , PHE D:161 , LYS D:165 , TYR D:206
binding site for residue SO4 D 304
14
AD5
SOFTWARE
ARG A:81 , LYS A:87 , TYR A:142 , GLY A:149 , ASN A:150 , ARG A:153 , ASN A:190 , LYS B:178 , ASP B:217 , HOH E:101 , HOH E:102 , HOH E:103
BINDING SITE FOR CHAIN E OF CYCLOSPORIN A
15
AD6
SOFTWARE
ARG B:81 , ILE B:112 , ILE B:146 , ASN B:150 , LEU B:183 , GLN B:186 , ASN B:190 , ILE B:193 , TYR B:222 , LEU B:262
BINDING SITE FOR CHAIN F OF CYCLOSPORIN A
16
AD7
SOFTWARE
ARG C:81 , ILE C:112 , ILE C:146 , ASN C:150 , LEU C:183 , GLN C:186 , ASN C:190 , ILE C:193 , TYR C:222 , LEU C:262 , ASP D:217 , HOH G:101 , HOH G:102 , HOH G:103
BINDING SITE FOR CHAIN G OF CYCLOSPORIN A
17
AD8
SOFTWARE
ARG D:81 , ILE D:112 , ILE D:146 , ASN D:150 , ARG D:153 , GLN D:186 , ASN D:190 , TYR D:222 , LEU D:262 , HOH D:410 , HOH H:101 , HOH H:102 , HOH H:103
BINDING SITE FOR CHAIN H OF CYCLOSPORIN A
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain H
Asymmetric Unit 1
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Asym.Unit (419 KB)
Header - Asym.Unit
Biol.Unit 1 (205 KB)
Header - Biol.Unit 1
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