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4YV5
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYOTOXIN II FROM BOTHROPS MOOJENI COMPLEXED TO SURAMIN
Authors
:
G. H. M. Salvador, M. R. M. Fontes
Date
:
19 Mar 15 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bothrops Moojeni, Myotoxin Ii, Lys49-Pla2, Suramin, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. H. M. Salvador, M. R. M. Fontes
Structural And Functional Evidence For Membrane Docking And Disruption Sites On Phospholipase A2-Like Proteins Revealed By Complexation With The Inhibitor Suramin
Acta Crystallogr. , Sect. D V. 71 2066 2015
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
4a: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRa)
4b: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRb)
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Label:
No.
Name
Count
Type
Full Name
1
1PE
2
Ligand/Ion
PENTAETHYLENE GLYCOL
2
PE4
1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
3
SO4
7
Ligand/Ion
SULFATE ION
4
SVR
2
Ligand/Ion
8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:20 , LYS B:115 , ARG B:118 , SO4 B:202
binding site for residue SO4 B 201
02
AC2
SOFTWARE
LYS B:16 , ASN B:17 , LYS B:20 , SO4 B:201 , HOH B:301 , HOH B:351
binding site for residue SO4 B 202
03
AC3
SOFTWARE
LYS A:7 , LEU A:10 , GLN A:11 , GLY A:15 , TYR A:75 , TRP A:77 , LYS B:7 , LEU B:10 , GLN B:11 , GLY B:15 , TYR B:75 , TRP B:77
binding site for residue PE4 B 203
04
AC4
SOFTWARE
TYR A:121 , LYS A:123 , PRO A:125 , LEU B:2 , ILE B:9 , CYS B:29 , GLY B:30 , HIS B:48
binding site for residue 1PE B 204
05
AC5
SOFTWARE
GLY B:33 , ARG B:34 , LYS B:53 , HOH B:302
binding site for residue SO4 B 205
06
AC6
SOFTWARE
LYS A:38 , LYS A:116 , TYR A:117 , LYS B:116 , TYR B:117
binding site for residue SO4 B 206
07
AC7
SOFTWARE
PHE A:3 , LYS A:7 , LEU A:10 , ASN A:17 , PRO A:18 , CYS A:27 , LYS A:38 , ARG A:72 , PHE A:126 , CYS A:127 , LYS A:128 , SO4 A:202 , SVR A:205 , HOH A:380 , ASN B:114 , LYS B:115 , LYS B:116 , TYR B:119 , TYR B:121 , LEU B:122 , PHE B:126 , HOH B:305 , HOH B:311 , HOH B:316 , HOH B:320 , HOH B:338 , HOH B:347 , HOH B:352 , HOH B:356 , HOH B:361
binding site for residue SVR B 207
08
AC8
SOFTWARE
LYS A:16 , LYS A:20 , LYS A:115 , ARG A:118
binding site for residue SO4 A 201
09
AC9
SOFTWARE
LYS A:16 , ASN A:17 , LYS A:20 , HOH A:301 , SVR B:207
binding site for residue SO4 A 202
10
AD1
SOFTWARE
ILE A:9 , PRO A:18 , TYR A:22 , ASN A:28 , GLY A:30 , CYS A:45 , HIS A:48 , LYS A:49
binding site for residue 1PE A 203
11
AD2
SOFTWARE
ARG A:34 , LYS A:53 , HOH A:372
binding site for residue SO4 A 204
12
AD3
SOFTWARE
ASN A:114 , LYS A:115 , LYS A:116 , TYR A:119 , TYR A:121 , LEU A:122 , PHE A:126 , HOH A:305 , HOH A:316 , HOH A:321 , HOH A:348 , HOH A:353 , HOH A:355 , HOH A:357 , HOH A:363 , HOH A:368 , HOH A:369 , PHE B:3 , GLY B:6 , LYS B:7 , LEU B:10 , ASN B:17 , PRO B:18 , CYS B:27 , LYS B:36 , LYS B:38 , ARG B:72 , PHE B:126 , CYS B:127 , LYS B:128 , SVR B:207 , HOH B:323 , HOH B:351
binding site for residue SVR A 205
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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