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4YTZ
Asym. Unit
Info
Asym.Unit (412 KB)
Biol.Unit 1 (404 KB)
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(1)
Title
:
RAT XANTHINE OXIDOREDUCTASE, C-TERMINAL DELETION PROTEIN VARIANT, CRYSTAL GROWN WITHOUT DITHIOTHREITOL
Authors
:
T. Nishino, K. Okamoto, Y. Kawaguchi, T. Matsumura, B. T. Eger, E. F. Pai T. Nishino
Date
:
18 Mar 15 (Deposition) - 22 Apr 15 (Release) - 02 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Xanthine Oxidoreductase, Xanthine Oxidase, Xanthine Dehydrogenase, D/O Conversion, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nishino, K. Okamoto, Y. Kawaguchi, T. Matsumura, B. T. Eger, E. F. Pai, T. Nishino
The C-Terminal Peptide Plays A Role In The Formation Of An Intermediate Form During The Transition Between Xanthine Dehydrogenase And Xanthine Oxidase
Febs J. V. 282 3075 2015
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
4c: FE2/S2 (INORGANIC) CLUSTER (FESc)
4d: FE2/S2 (INORGANIC) CLUSTER (FESd)
5a: URIC ACID (URCa)
5b: URIC ACID (URCb)
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Label:
No.
Name
Count
Type
Full Name
1
BCT
2
Ligand/Ion
BICARBONATE ION
2
CA
4
Ligand/Ion
CALCIUM ION
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
FES
4
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
URC
2
Ligand/Ion
URIC ACID
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:111 , CYS A:112 , GLY A:113 , CYS A:115 , CYS A:147 , ARG A:148 , CYS A:149
binding site for residue FES A 1401
02
AC2
SOFTWARE
GLY A:42 , CYS A:43 , GLY A:44 , GLY A:46 , GLY A:47 , CYS A:48 , GLY A:49 , CYS A:51 , ASN A:71 , CYS A:73
binding site for residue FES A 1402
03
AC3
SOFTWARE
GLY A:46 , LEU A:256 , VAL A:257 , VAL A:258 , GLY A:259 , ASN A:260 , THR A:261 , GLU A:262 , ILE A:263 , ALA A:300 , PHE A:336 , ALA A:337 , ALA A:345 , SER A:346 , GLY A:349 , ASN A:350 , ILE A:352 , THR A:353 , SER A:358 , ASP A:359 , ILE A:402 , LEU A:403
binding site for residue FAD A 1403
04
AC4
SOFTWARE
GLU A:802 , ARG A:880 , PHE A:914 , SER A:1008 , PHE A:1009 , THR A:1010 , ALA A:1078 , ALA A:1079 , GLU A:1261
binding site for residue URC A 1404
05
AC5
SOFTWARE
ARG A:839 , HIS A:840 , ILE A:877 , THR A:909 , ALA A:910 , PHE A:911 , PHE A:914 , GLY A:915 , GLN A:918
binding site for residue BCT A 1405
06
AC6
SOFTWARE
GLY A:867 , THR A:870 , GLU A:871 , SER A:874 , SER A:907 , ASN A:908
binding site for residue CA A 1406
07
AC7
SOFTWARE
GLU A:740 , HIS A:741 , TYR A:743 , THR A:836 , GLY A:837
binding site for residue CA A 1407
08
AC8
SOFTWARE
GLN B:111 , CYS B:112 , GLY B:113 , CYS B:115 , CYS B:147 , ARG B:148 , CYS B:149
binding site for residue FES B 1401
09
AC9
SOFTWARE
GLY B:42 , CYS B:43 , GLY B:44 , GLY B:46 , CYS B:48 , GLY B:49 , CYS B:51 , ASN B:71 , CYS B:73
binding site for residue FES B 1402
10
AD1
SOFTWARE
GLU B:45 , GLY B:46 , LEU B:256 , VAL B:257 , VAL B:258 , GLY B:259 , ASN B:260 , THR B:261 , GLU B:262 , ILE B:263 , ALA B:300 , PHE B:336 , VAL B:344 , ALA B:345 , SER B:346 , GLY B:349 , ASN B:350 , ILE B:352 , THR B:353 , SER B:358 , ASP B:359 , LEU B:403
binding site for residue FAD B 1403
11
AD2
SOFTWARE
GLU B:802 , ARG B:880 , PHE B:914 , SER B:1008 , PHE B:1009 , THR B:1010 , ALA B:1078 , ALA B:1079 , GLU B:1261
binding site for residue URC B 1404
12
AD3
SOFTWARE
ARG B:839 , HIS B:840 , ILE B:877 , THR B:909 , ALA B:910 , PHE B:911 , PHE B:914 , GLY B:915 , GLN B:918
binding site for residue BCT B 1405
13
AD4
SOFTWARE
GLY B:867 , THR B:870 , GLU B:871 , SER B:874 , SER B:907 , ASN B:908
binding site for residue CA B 1406
14
AD5
SOFTWARE
GLU B:740 , HIS B:741 , TYR B:743 , THR B:836 , GLY B:837
binding site for residue CA B 1407
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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