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4YTY
Asym. Unit
Info
Asym.Unit (443 KB)
Biol.Unit 1 (434 KB)
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(1)
Title
:
STRUCTURE OF RAT XANTHINE OXIDOREDUCTASE, C535A/C992R/C1324S, NADH BOUND FORM
Authors
:
T. Nishino, K. Okamoto, Y. Kawaguchi, T. Matsumura, B. T. Eger, E. F. Pai
Date
:
18 Mar 15 (Deposition) - 22 Apr 15 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Xanthine Oxidoreductase, Xanthine Oxidase, Xanthine Dehydrogenase, D/O Conversion, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nishino, K. Okamoto, Y. Kawaguchi, T. Matsumura, B. T. Eger, E. F. Pai, T. Nishino
The C-Terminal Peptide Plays A Role In The Formation Of An Intermediate Form During The Transition Between Xanthine Dehydrogenase And Xanthine Oxidase.
Febs J. V. 282 3075 2015
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Hetero Components
(7, 17)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
4c: FE2/S2 (INORGANIC) CLUSTER (FESc)
4d: FE2/S2 (INORGANIC) CLUSTER (FESd)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
6a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
6b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
7a: URIC ACID (URCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
2
Ligand/Ion
BICARBONATE ION
2
CA
2
Ligand/Ion
CALCIUM ION
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
FES
4
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
GOL
4
Ligand/Ion
GLYCEROL
6
NAI
2
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7
URC
1
Ligand/Ion
URIC ACID
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:111 , CYS A:112 , GLY A:113 , CYS A:115 , CYS A:147 , ARG A:148 , CYS A:149
binding site for residue FES A 3001
02
AC2
SOFTWARE
GLY A:42 , CYS A:43 , GLY A:44 , GLY A:46 , GLY A:47 , CYS A:48 , GLY A:49 , CYS A:51 , ASN A:71 , CYS A:73
binding site for residue FES A 3002
03
AC3
SOFTWARE
GLY A:867 , THR A:870 , GLU A:871 , ASP A:872 , SER A:874 , SER A:907 , ASN A:908
binding site for residue CA A 3003
04
AC4
SOFTWARE
GLU A:45 , GLY A:46 , LYS A:255 , LEU A:256 , VAL A:257 , VAL A:258 , GLY A:259 , ASN A:260 , THR A:261 , GLU A:262 , ILE A:263 , ALA A:300 , PHE A:336 , ALA A:337 , VAL A:341 , ALA A:345 , SER A:346 , GLY A:349 , ASN A:350 , ILE A:352 , THR A:353 , SER A:358 , ASP A:359 , ILE A:402 , LEU A:403 , LYS A:421 , ASP A:428 , NAI A:3007 , HOH A:3189 , HOH A:3401 , HOH A:3454 , HOH A:3464
binding site for residue FAD A 3004
05
AC5
SOFTWARE
GLU A:802 , ARG A:880 , PHE A:914 , SER A:1008 , PHE A:1009 , THR A:1010 , ALA A:1078 , ALA A:1079 , GLU A:1261 , HOH A:3161 , HOH A:3500
binding site for residue URC A 3005
06
AC6
SOFTWARE
ARG A:839 , HIS A:840 , THR A:909 , ALA A:910 , PHE A:911 , PHE A:914 , GLY A:915 , GLN A:918
binding site for residue BCT A 3006
07
AC7
SOFTWARE
GLU A:262 , LYS A:270 , SER A:355 , PRO A:356 , ILE A:357 , TYR A:392 , ARG A:393 , ASP A:429 , ILE A:430 , GLY A:457 , ALA A:459 , PRO A:500 , GLY A:501 , ARG A:507 , SER A:1225 , FAD A:3004 , HOH A:3249 , HOH A:3386 , HOH A:3399 , HOH A:3419 , HOH A:3454 , HOH A:3545
binding site for residue NAI A 3007
08
AC8
SOFTWARE
GLN A:561 , GLY A:574 , SER A:1184 , SER A:1185 , PRO A:1188 , HOH A:3120
binding site for residue GOL A 3008
09
AC9
SOFTWARE
ILE A:666 , ARG A:804 , ILE A:835 , ASN A:869 , SER A:907 , HOH A:3370
binding site for residue GOL A 3009
10
AD1
SOFTWARE
GLN B:111 , CYS B:112 , GLY B:113 , CYS B:115 , CYS B:147 , ARG B:148 , CYS B:149 , LEU B:744
binding site for residue FES B 4001
11
AD2
SOFTWARE
GLY B:42 , CYS B:43 , GLY B:44 , GLY B:46 , GLY B:47 , CYS B:48 , GLY B:49 , CYS B:51 , ASN B:71 , CYS B:73
binding site for residue FES B 4002
12
AD3
SOFTWARE
GLY B:867 , THR B:870 , GLU B:871 , ASP B:872 , SER B:874 , SER B:907 , ASN B:908
binding site for residue CA B 4003
13
AD4
SOFTWARE
GLU B:45 , GLY B:46 , LYS B:255 , LEU B:256 , VAL B:257 , VAL B:258 , GLY B:259 , ASN B:260 , THR B:261 , GLU B:262 , ILE B:263 , ALA B:300 , PHE B:336 , ALA B:337 , VAL B:341 , ALA B:345 , SER B:346 , GLY B:349 , ASN B:350 , ILE B:352 , THR B:353 , SER B:358 , ASP B:359 , ILE B:402 , LEU B:403 , LYS B:421 , ASP B:428 , NAI B:4006 , HOH B:4176 , HOH B:4186 , HOH B:4414 , HOH B:4561 , HOH B:4619 , HOH B:4665 , HOH B:4689
binding site for residue FAD B 4004
14
AD5
SOFTWARE
ARG B:839 , HIS B:840 , ILE B:877 , THR B:909 , ALA B:910 , PHE B:911 , PHE B:914 , GLY B:915 , GLN B:918
binding site for residue BCT B 4005
15
AD6
SOFTWARE
GLU B:262 , LYS B:270 , SER B:355 , PRO B:356 , ILE B:357 , TYR B:392 , ARG B:393 , ASP B:429 , ILE B:430 , GLY B:457 , ALA B:459 , PRO B:500 , GLY B:501 , ARG B:507 , SER B:1225 , FAD B:4004 , HOH B:4197 , HOH B:4227 , HOH B:4309 , HOH B:4414 , HOH B:4431 , HOH B:4530 , HOH B:4538 , HOH B:4628
binding site for residue NAI B 4006
16
AD7
SOFTWARE
GLN B:561 , GLY B:574 , SER B:1184 , SER B:1185 , HOH B:4175 , HOH B:4372
binding site for residue GOL B 4007
17
AD8
SOFTWARE
GLY B:664 , HIS B:665 , ILE B:666 , ARG B:804 , ILE B:835 , ASN B:869 , PRO B:906 , SER B:907 , HOH B:4167
binding site for residue GOL B 4008
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (443 KB)
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