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4YTS
Asym. Unit
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Asym.Unit (204 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D-TAGATOSE 3-EPIMERASE C66S FROM PSEUDOMONAS CICHORII IN COMPLEX WITH 1-DEOXY 3-KETO D-GALACTITOL
Authors
:
H. Yoshida, A. Yoshihara, T. Ishii, K. Izumori, S. Kamitori
Date
:
18 Mar 15 (Deposition) - 23 Mar 16 (Release) - 23 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Epimerase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yoshida, A. Yoshihara, T. Ishii, K. Izumori, S. Kamitori
Crystal Structure Of D-Tagatose 3-Epimerase C66S From Pseudomonas Cichorii In Complex With 1-Deoxy 3-Keto D-Galactitol
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: 1-DEOXY-ALPHA-D-XYLO-HEX-3-ULOFURA... (TGRa)
2b: 1-DEOXY-ALPHA-D-XYLO-HEX-3-ULOFURA... (TGRb)
2c: 1-DEOXY-ALPHA-D-XYLO-HEX-3-ULOFURA... (TGRc)
3a: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSa)
3b: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSb)
3c: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSc)
3d: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSd)
3e: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSe)
3f: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSf)
3g: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSg)
3h: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSh)
3i: 1-DEOXY-D-XYLO-HEX-3-ULOSE (TGSi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
TGR
3
Ligand/Ion
1-DEOXY-ALPHA-D-XYLO-HEX-3-ULOFURANOSE
3
TGS
9
Ligand/Ion
1-DEOXY-D-XYLO-HEX-3-ULOSE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:152 , ASP A:185 , HIS A:211 , GLU A:246 , TGS A:402
binding site for residue MN A 401
02
AC2
SOFTWARE
LEU A:108 , TRP A:113 , GLU A:152 , GLU A:158 , ASP A:185 , HIS A:188 , HIS A:211 , ARG A:217 , GLU A:246 , VAL A:259 , MN A:401 , HOH A:525
binding site for residue TGS A 402
03
AC3
SOFTWARE
TRP A:15 , SER A:37 , ILE A:67 , GLY A:68 , TRP A:113 , HOH A:525
binding site for residue TGS A 403
04
AC4
SOFTWARE
TRP A:11 , ARG A:25 , ASP A:271
binding site for residue TGR A 404
05
AC5
SOFTWARE
SER A:116 , PHE A:157 , ARG B:257 , TGS B:401
binding site for residue TGS A 405
06
AC6
SOFTWARE
ARG A:257 , ALA A:258 , TRP A:262 , TGS A:405 , SER B:116 , PHE B:157 , HOH B:550 , HOH B:586
binding site for residue TGS B 401
07
AC7
SOFTWARE
GLU B:152 , ASP B:185 , HIS B:211 , GLU B:246 , TGS B:403
binding site for residue MN B 402
08
AC8
SOFTWARE
LEU B:108 , GLU B:152 , GLU B:158 , ASP B:185 , HIS B:188 , HIS B:211 , ARG B:217 , GLU B:246 , MN B:402 , HOH B:508 , HOH B:518
binding site for residue TGS B 403
09
AC9
SOFTWARE
TRP B:11 , THR B:22 , ARG B:25 , ASP B:271 , HOH B:521
binding site for residue TGR B 404
10
AD1
SOFTWARE
GLU C:152 , ASP C:185 , HIS C:211 , GLU C:246 , TGS C:402
binding site for residue MN C 401
11
AD2
SOFTWARE
LEU C:108 , GLU C:152 , GLU C:158 , ASP C:185 , HIS C:188 , HIS C:211 , ARG C:217 , GLU C:246 , MN C:401 , HOH C:502 , HOH C:507
binding site for residue TGS C 402
12
AD3
SOFTWARE
TRP C:15 , SER C:37 , GLY C:39 , ILE C:67 , GLY C:68 , TRP C:113 , HOH C:502
binding site for residue TGS C 403
13
AD4
SOFTWARE
ARG C:257 , ALA C:258 , SER D:116 , PHE D:157 , HOH D:506
binding site for residue TGS D 401
14
AD5
SOFTWARE
GLU D:152 , ASP D:185 , HIS D:211 , GLU D:246 , TGS D:403
binding site for residue MN D 402
15
AD6
SOFTWARE
TRP D:113 , GLU D:152 , GLU D:158 , ASP D:185 , HIS D:188 , HIS D:211 , ARG D:217 , GLU D:246 , VAL D:259 , MN D:402 , HOH D:505
binding site for residue TGS D 403
16
AD7
SOFTWARE
SER C:116 , PHE C:157 , PRO D:114 , PHE D:157 , GLU D:158 , ARG D:257 , ALA D:258 , TRP D:262
binding site for residue TGR D 404
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Asym.Unit (204 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (101 KB)
Header - Biol.Unit 2
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