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4YSR
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (321 KB)
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(1)
Title
:
STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 16.6 MGY
Authors
:
Y. Fukuda, K. M. Tse, M. Suzuki, K. Diederichs, K. Hirata, T. Nakane, M. S E. Nango, K. Tono, Y. Joti, T. Kameshima, C. Song, T. Hatsui, M. Yabashi O. Nureki, H. Matsumura, T. Inoue, S. Iwata, E. Mizohata
Date
:
17 Mar 15 (Deposition) - 24 Feb 16 (Release) - 25 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.34
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Nitrite, Copper, Reductase, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Fukuda, K. M. Tse, M. Suzuki, K. Diederichs, K. Hirata, T. Nakane, M. Sugahara, E. Nango, K. Tono, Y. Joti, T. Kameshima, C. Song, T. Hatsui, M. Yabashi, O. Nureki, H. Matsumura, T. Inoue, S. Iwata, E. Mizohata
Redox-Coupled Structural Changes In Nitrite Reductase Revealed By Serial Femtosecond And Microfocus Crystallography
J. Biochem. V. 159 527 2016
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CU
7
Ligand/Ion
COPPER (II) ION
2
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:95 , CYS A:135 , HIS A:143 , MET A:148
binding site for residue CU A 401
2
AC2
SOFTWARE
HIS A:100 , HIS A:134 , HIS A:294 , HOH A:734
binding site for residue CU A 402
3
AC3
SOFTWARE
HIS A:42 , GLU A:53 , HIS A:83 , HOH A:735
binding site for residue CU A 403
4
AC4
SOFTWARE
HIS A:39
binding site for residue CU A 404
5
AC5
SOFTWARE
ASP A:167 , HOH A:518
binding site for residue CU A 405
6
AC6
SOFTWARE
HIS A:103 , THR A:248 , VAL A:249 , HOH A:539
binding site for residue CU A 406
7
AC7
SOFTWARE
PRO A:191 , GLU A:239 , HOH A:577 , HOH A:599
binding site for residue CU A 407
8
AC8
SOFTWARE
ASP A:163 , ASP A:167 , ARG A:168 , GLU A:169 , HOH A:605
binding site for residue MPD A 408
9
AC9
SOFTWARE
ASP A:55 , TYR A:193 , GLN A:300 , LYS A:301 , HOH A:670
binding site for residue SO4 A 409
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SAPs(SNPs)/Variants
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Exons
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Pfam Domains
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Asymmetric Unit 1
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