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4YSE
Asym. Unit
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Asym.Unit (387 KB)
Biol.Unit 1 (380 KB)
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(1)
Title
:
HIGH RESOLUTION SYNCHROTRON STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS
Authors
:
Y. Fukuda, K. M. Tse, M. Suzuki, K. Diederichs, K. Hirata, T. Nakane, M. S E. Nango, K. Tono, Y. Joti, T. Kameshima, C. Song, T. Hatsui, M. Yabashi O. Nureki, H. Matsumura, T. Inoue, S. Iwata, E. Mizohata
Date
:
17 Mar 15 (Deposition) - 09 Mar 16 (Release) - 22 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Nitrite, Copper, Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Fukuda, K. M. Tse, T. Nakane, T. Nakatsu, M. Suzuki, M. Sugahara, S. Inoue, T. Masuda, F. Yumoto, N. Matsugaki, E. Nango, K. Tono, Y. Joti T. Kameshima, C. Song, T. Hatsui, M. Yabashi, O. Nureki, M. E. Murphy, T. Inoue, S. Iwata, E. Mizohata
Redox-Coupled Proton Transfer Mechanism In Nitrite Reductas Revealed By Femtosecond Crystallography
Proc. Natl. Acad. Sci. Usa V. 113 2928 2016
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
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Label:
No.
Name
Count
Type
Full Name
1
ACY
5
Ligand/Ion
ACETIC ACID
2
CU
6
Ligand/Ion
COPPER (II) ION
3
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , CYS A:136 , HIS A:145 , MET A:150
binding site for residue CU A 401
02
AC2
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:135 , HOH A:505 , HIS C:306 , HOH C:842
binding site for residue CU A 402
03
AC3
SOFTWARE
VAL A:224
binding site for residue MPD A 403
04
AC4
SOFTWARE
ALA A:10 , ARG A:14 , HOH B:506
binding site for residue MPD A 404
05
AC5
SOFTWARE
GLY A:140 , MET A:141 , VAL A:142 , PRO A:143 , TRP A:144 , TYR A:203 , GLU C:313
binding site for residue ACY A 405
06
AC6
SOFTWARE
HIS A:306 , HOH A:718 , ASP B:98 , HIS B:100 , HIS B:135 , HOH B:509
binding site for residue CU A 406
07
AC7
SOFTWARE
HIS B:95 , CYS B:136 , HIS B:145 , MET B:150
binding site for residue CU B 401
08
AC8
SOFTWARE
PHE A:312 , PRO B:139 , HOH B:526
binding site for residue MPD B 402
09
AC9
SOFTWARE
GLU A:313 , GLY B:140 , MET B:141 , VAL B:142 , PRO B:143 , TRP B:144 , TYR B:203 , MET B:210
binding site for residue ACY B 403
10
AD1
SOFTWARE
ASN B:115
binding site for residue ACY B 404
11
AD2
SOFTWARE
HIS B:306 , HOH B:746 , ASP C:98 , HIS C:100 , HIS C:135 , HOH C:602
binding site for residue CU B 405
12
AD3
SOFTWARE
LEU A:106 , ALA A:137 , PRO A:139 , ILE C:300 , ALA C:302 , PHE C:312 , HOH C:625 , HOH C:668
binding site for residue MPD C 501
13
AD4
SOFTWARE
HIS C:95 , CYS C:136 , HIS C:145 , MET C:150
binding site for residue CU C 502
14
AD5
SOFTWARE
ILE B:300 , LEU C:106 , PRO C:139 , HOH C:611
binding site for residue MPD C 503
15
AD6
SOFTWARE
GLU C:46 , HOH C:866 , HOH C:900
binding site for residue MPD C 504
16
AD7
SOFTWARE
LYS C:49 , GLU C:58
binding site for residue ACY C 505
17
AD8
SOFTWARE
HIS C:28 , GLN C:30 , HOH C:774
binding site for residue ACY C 506
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (387 KB)
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