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4YDD
Biol. Unit 2
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Asym.Unit (1.2 MB)
Biol.Unit 1 (407 KB)
Biol.Unit 2 (402 KB)
Biol.Unit 3 (405 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, M. D. Youngblut, J. A. Tainer
Date
:
21 Feb 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Electron-Shuttling Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
[
close entry info
]
Hetero Components
(7, 12)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
3a: GLYCEROL (GOLa)
4a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
4b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
4c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
5a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
5b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
5c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
6a: MOLYBDENUM ATOM (MOa)
6b: MOLYBDENUM ATOM (MOb)
6c: MOLYBDENUM ATOM (MOc)
7a: SODIUM ION (NAa)
8a: DI(HYDROXYETHYL)ETHER (PEGa)
9a: IRON/SULFUR CLUSTER (SF4a)
9b: IRON/SULFUR CLUSTER (SF4b)
9c: IRON/SULFUR CLUSTER (SF4c)
9d: IRON/SULFUR CLUSTER (SF4d)
9e: IRON/SULFUR CLUSTER (SF4e)
9f: IRON/SULFUR CLUSTER (SF4f)
9g: IRON/SULFUR CLUSTER (SF4g)
9h: IRON/SULFUR CLUSTER (SF4h)
9i: IRON/SULFUR CLUSTER (SF4i)
9j: IRON/SULFUR CLUSTER (SF4j)
9k: IRON/SULFUR CLUSTER (SF4k)
9l: IRON/SULFUR CLUSTER (SF4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
GOL
1
Ligand/Ion
GLYCEROL
4
MD1
1
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
5
MGD
1
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
6
MO
-1
Ligand/Ion
MOLYBDENUM ATOM
7
NA
-1
Ligand/Ion
SODIUM ION
8
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
9
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
[
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]
Sites
(13, 13)
Info
All Sites
01: AD9 (SOFTWARE)
02: AE1 (SOFTWARE)
03: AE2 (SOFTWARE)
04: AE3 (SOFTWARE)
05: AE4 (SOFTWARE)
06: AE5 (SOFTWARE)
07: AE6 (SOFTWARE)
08: AE7 (SOFTWARE)
09: AE8 (SOFTWARE)
10: AE9 (SOFTWARE)
11: AF1 (SOFTWARE)
12: AF2 (SOFTWARE)
13: AF3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD9
SOFTWARE
HIS C:32 , CYS C:36 , ALA C:39 , CYS C:40 , HIS C:42 , GLY C:73 , CYS C:74
binding site for residue SF4 C 1001
02
AE1
SOFTWARE
ASP C:170 , MGD C:1003 , MD1 C:1004 , HOH C:1317
binding site for residue MO C 1002
03
AE2
SOFTWARE
LYS C:76 , ASP C:170 , GLY C:201 , ASN C:203 , GLN C:206 , THR C:207 , ILE C:228 , SER C:229 , PRO C:230 , ASP C:231 , ASN C:233 , PRO C:247 , GLY C:248 , ASP C:250 , GLY C:421 , GLY C:422 , GLY C:423 , TRP C:427 , ILE C:458 , GLY C:459 , ASN C:761 , PRO C:763 , HIS C:764 , SER C:765 , ARG C:766 , SER C:768 , VAL C:769 , HIS C:770 , ARG C:830 , ARG C:882 , MO C:1002 , MD1 C:1004 , HOH C:1230 , HOH C:1322 , HOH C:1350 , HOH C:1404 , HOH C:1414 , HOH C:1431
binding site for residue MGD C 1003
04
AE3
SOFTWARE
LEU C:33 , ASN C:35 , TYR C:168 , ASP C:170 , HIS C:426 , ARG C:537 , GLY C:538 , ASN C:539 , GLN C:543 , ILE C:564 , ASN C:565 , ARG C:567 , ASP C:569 , SER C:581 , TRP C:584 , LYS C:587 , ASP C:615 , SER C:762 , HIS C:764 , VAL C:769 , HIS C:770 , SER C:771 , THR C:772 , GLN C:849 , GLN C:881 , ARG C:882 , MO C:1002 , MGD C:1003 , HOH C:1271 , HOH C:1291 , HOH C:1317 , HOH C:1348
binding site for residue MD1 C 1004
05
AE4
SOFTWARE
ASP C:752 , ALA C:753 , HOH C:1274
binding site for residue EDO C 1005
06
AE5
SOFTWARE
TYR C:429 , ASP C:504 , MET C:740 , LYS C:748 , HOH C:1358
binding site for residue GOL C 1006
07
AE6
SOFTWARE
GLU C:495 , ASN C:553 , HOH C:1132 , HOH C:1184 , HOH C:1341 , TRP E:806 , ALA E:894 , ARG F:103
binding site for residue EDO C 1007
08
AE7
SOFTWARE
GLN C:182 , TRP C:461 , VAL C:466 , PRO C:872
binding site for residue PEG C 1008
09
AE8
SOFTWARE
CYS D:149 , CYS D:170 , LYS D:171 , GLY D:172 , ALA D:173 , GLN D:174 , ALA D:175 , CYS D:176
binding site for residue F3S D 401
10
AE9
SOFTWARE
CYS D:137 , ASN D:138 , CYS D:140 , CYS D:145 , CYS D:180 , LYS D:196
binding site for residue SF4 D 402
11
AF1
SOFTWARE
CYS D:21 , CYS D:24 , GLN D:25 , CYS D:27 , ARG D:47 , CYS D:216 , GLY D:218
binding site for residue SF4 D 403
12
AF2
SOFTWARE
CYS D:31 , TRP D:35 , ARG D:47 , CYS D:197 , CYS D:200 , CYS D:212
binding site for residue SF4 D 404
13
AF3
SOFTWARE
GLY D:85 , ILE D:86 , PHE D:88 , THR D:109 , PRO D:110 , ARG D:111 , SER D:112
binding site for residue EDO D 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.2 MB)
Header - Asym.Unit
Biol.Unit 1 (407 KB)
Header - Biol.Unit 1
Biol.Unit 2 (402 KB)
Header - Biol.Unit 2
Biol.Unit 3 (405 KB)
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