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4YDD
Biol. Unit 1
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (407 KB)
Biol.Unit 2 (402 KB)
Biol.Unit 3 (405 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, M. D. Youngblut, J. A. Tainer
Date
:
21 Feb 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Electron-Shuttling Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
[
close entry info
]
Hetero Components
(5, 15)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
3a: GLYCEROL (GOLa)
4a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
4b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
4c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
5a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
5b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
5c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
6a: MOLYBDENUM ATOM (MOa)
6b: MOLYBDENUM ATOM (MOb)
6c: MOLYBDENUM ATOM (MOc)
7a: SODIUM ION (NAa)
8a: DI(HYDROXYETHYL)ETHER (PEGa)
9a: IRON/SULFUR CLUSTER (SF4a)
9b: IRON/SULFUR CLUSTER (SF4b)
9c: IRON/SULFUR CLUSTER (SF4c)
9d: IRON/SULFUR CLUSTER (SF4d)
9e: IRON/SULFUR CLUSTER (SF4e)
9f: IRON/SULFUR CLUSTER (SF4f)
9g: IRON/SULFUR CLUSTER (SF4g)
9h: IRON/SULFUR CLUSTER (SF4h)
9i: IRON/SULFUR CLUSTER (SF4i)
9j: IRON/SULFUR CLUSTER (SF4j)
9k: IRON/SULFUR CLUSTER (SF4k)
9l: IRON/SULFUR CLUSTER (SF4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
GOL
-1
Ligand/Ion
GLYCEROL
4
MD1
1
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
5
MGD
1
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
6
MO
-1
Ligand/Ion
MOLYBDENUM ATOM
7
NA
-1
Ligand/Ion
SODIUM ION
8
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
9
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AF8 (SOFTWARE)
19: AG1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:32 , CYS A:36 , CYS A:40 , HIS A:42 , GLY A:73 , CYS A:74 , GLY A:77
binding site for residue SF4 A 1001
02
AC2
SOFTWARE
ASP A:170 , MGD A:1003 , MD1 A:1004 , HOH A:1110
binding site for residue MO A 1002
03
AC3
SOFTWARE
LYS A:76 , ASP A:170 , TRP A:200 , GLY A:201 , ASN A:203 , GLN A:206 , THR A:207 , ILE A:228 , SER A:229 , PRO A:230 , ASP A:231 , ASN A:233 , GLY A:248 , ASP A:250 , GLY A:421 , GLY A:422 , GLY A:423 , TRP A:427 , ILE A:458 , GLY A:459 , ASN A:761 , PRO A:763 , HIS A:764 , SER A:765 , ARG A:766 , SER A:768 , VAL A:769 , HIS A:770 , ARG A:830 , HIS A:835 , ARG A:882 , MO A:1002 , MD1 A:1004 , HOH A:1145 , HOH A:1209 , HOH A:1217 , HOH A:1388 , HOH A:1425 , HOH A:1514
binding site for residue MGD A 1003
04
AC4
SOFTWARE
LEU A:33 , ASN A:35 , TYR A:168 , ASP A:170 , HIS A:426 , TYR A:536 , ARG A:537 , GLY A:538 , ASN A:539 , GLN A:543 , ILE A:564 , ASN A:565 , ILE A:566 , ARG A:567 , ASP A:569 , SER A:581 , TRP A:584 , LYS A:587 , ASP A:615 , SER A:762 , HIS A:764 , VAL A:769 , HIS A:770 , SER A:771 , THR A:772 , HIS A:835 , GLN A:849 , GLN A:881 , ARG A:882 , MO A:1002 , MGD A:1003 , HOH A:1110 , HOH A:1199 , HOH A:1212 , HOH A:1326 , HOH A:1327
binding site for residue MD1 A 1004
05
AC5
SOFTWARE
ILE A:243 , HIS A:244 , VAL A:398 , THR A:399 , HOH A:1395 , GLU B:268 , GLY B:272 , HOH B:569
binding site for residue EDO A 1005
06
AC6
SOFTWARE
LYS A:462 , THR A:593 , SER A:594 , HIS A:596 , SER A:597 , ASN A:697 , TYR A:708 , HOH A:1172 , HOH A:1318
binding site for residue EDO A 1006
07
AC7
SOFTWARE
PHE A:192 , SER A:194 , ALA A:218 , ASN A:221 , HOH A:1603
binding site for residue EDO A 1007
08
AC8
SOFTWARE
TYR A:510 , SER A:514 , THR A:736 , LEU A:861 , HOH A:1117 , HOH A:1406
binding site for residue EDO A 1008
09
AC9
SOFTWARE
SER A:23 , TRP A:24 , HOH A:1237
binding site for residue EDO A 1009
10
AD1
SOFTWARE
ASN A:804 , PRO A:896 , ILE A:897 , SER A:898 , HOH A:1115 , HOH A:1298 , THR B:109 , PRO B:110
binding site for residue EDO A 1010
11
AD2
SOFTWARE
CYS B:149 , ASN B:151 , CYS B:170 , LYS B:171 , GLY B:172 , ALA B:173 , GLN B:174 , ALA B:175 , CYS B:176 , ALA B:194
binding site for residue F3S B 401
12
AD3
SOFTWARE
CYS B:137 , ASN B:138 , CYS B:140 , ALA B:144 , CYS B:145 , CYS B:180
binding site for residue SF4 B 402
13
AD4
SOFTWARE
CYS B:21 , ILE B:22 , CYS B:24 , GLN B:25 , CYS B:27 , ARG B:47 , CYS B:216 , GLY B:218
binding site for residue SF4 B 403
14
AD5
SOFTWARE
TYR B:14 , CYS B:31 , TRP B:35 , ARG B:47 , CYS B:197 , ILE B:198 , GLY B:199 , CYS B:200 , CYS B:212
binding site for residue SF4 B 404
15
AD6
SOFTWARE
GLY B:85 , ILE B:86 , PHE B:88 , THR B:109 , ARG B:111 , SER B:112
binding site for residue EDO B 405
16
AD7
SOFTWARE
PHE A:9 , GLU A:15 , GLU B:158 , GLN B:159
binding site for residue EDO B 406
17
AD8
SOFTWARE
PRO B:101 , GLY B:102 , HOH B:523
binding site for residue NA B 407
18
AF8
SOFTWARE
TRP A:806 , ARG B:103 , GLU E:495 , ASN E:553 , HOH E:1275 , HOH E:1301 , HOH E:1410
binding site for residue EDO E 1005
19
AG1
SOFTWARE
ASP B:228 , SER B:231 , SER B:232 , THR B:325 , ASP B:326 , ARG E:625
binding site for residue EDO E 1007
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (1.2 MB)
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Biol.Unit 1 (407 KB)
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