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4YCO
Biol. Unit 3
Info
Asym.Unit (527 KB)
Biol.Unit 1 (178 KB)
Biol.Unit 2 (171 KB)
Biol.Unit 3 (176 KB)
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(1)
Title
:
E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) IN COMPLEX WITH TRNAPHE
Authors
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Date
:
20 Feb 15 (Deposition) - 22 Apr 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Trna Modification, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Major Reorientation Of Trna Substrates Defines Specificity Of Dihydrouridine Synthases.
Proc. Natl. Acad. Sci. Usa V. 112 6033 2015
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
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No.
Name
Count
Type
Full Name
1
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(10, 10)
Info
All Sites
01: AC4 (SOFTWARE)
02: AE5 (SOFTWARE)
03: AE6 (SOFTWARE)
04: AE7 (SOFTWARE)
05: AE8 (SOFTWARE)
06: AE9 (SOFTWARE)
07: AF1 (SOFTWARE)
08: AF2 (SOFTWARE)
09: AF3 (SOFTWARE)
10: AF4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ALA C:6 , PRO C:7 , MET C:8 , GLU C:9 , PHE C:33 , GLN C:68 , ASN C:95 , LYS C:139 , HIS C:168 , TYR C:176 , ASN C:200 , GLY C:201 , GLU C:202 , GLY C:224 , ARG C:225 , HOH C:513 , HOH C:566 , HOH C:567 , U F:16
binding site for residue FMN C 401
02
AE5
SOFTWARE
G F:15 , HOH F:253 , HOH F:254 , HOH F:255 , HOH F:256 , HOH F:292
binding site for residue MN F 101
03
AE6
SOFTWARE
HOH F:208 , HOH F:209 , HOH F:210 , HOH F:211 , HOH F:212 , HOH F:213
binding site for residue MG F 102
04
AE7
SOFTWARE
HOH F:214 , HOH F:215 , HOH F:216 , HOH F:217 , HOH F:218 , HOH F:219
binding site for residue MG F 103
05
AE8
SOFTWARE
U F:51 , HOH F:220 , HOH F:221 , HOH F:222 , HOH F:223 , HOH F:224
binding site for residue MG F 104
06
AE9
SOFTWARE
HOH D:213 , G F:18 , HOH F:201 , HOH F:207 , HOH F:225 , HOH F:226
binding site for residue MG F 105
07
AF1
SOFTWARE
U F:45 , G F:46 , HOH F:227 , HOH F:228 , HOH F:229 , HOH F:230
binding site for residue MG F 106
08
AF2
SOFTWARE
U F:12 , HOH F:231 , HOH F:232 , HOH F:233 , HOH F:234 , HOH F:235
binding site for residue MG F 107
09
AF3
SOFTWARE
HOH F:236 , HOH F:237 , HOH F:238 , HOH F:239 , HOH F:240
binding site for residue MG F 108
10
AF4
SOFTWARE
HOH C:511 , C F:17 , G F:19 , HOH F:241 , HOH F:242 , HOH F:243
binding site for residue MG F 109
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Protein
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Protein & NOT Variant
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Chain C
Chain F
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (527 KB)
Header - Asym.Unit
Biol.Unit 1 (178 KB)
Header - Biol.Unit 1
Biol.Unit 2 (171 KB)
Header - Biol.Unit 2
Biol.Unit 3 (176 KB)
Header - Biol.Unit 3
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