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4YCO
Biol. Unit 2
Info
Asym.Unit (527 KB)
Biol.Unit 1 (178 KB)
Biol.Unit 2 (171 KB)
Biol.Unit 3 (176 KB)
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(1)
Title
:
E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) IN COMPLEX WITH TRNAPHE
Authors
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Date
:
20 Feb 15 (Deposition) - 22 Apr 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Trna Modification, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Major Reorientation Of Trna Substrates Defines Specificity Of Dihydrouridine Synthases.
Proc. Natl. Acad. Sci. Usa V. 112 6033 2015
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
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Label:
No.
Name
Count
Type
Full Name
1
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(12, 12)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AD3 (SOFTWARE)
04: AD5 (SOFTWARE)
05: AD6 (SOFTWARE)
06: AD7 (SOFTWARE)
07: AD8 (SOFTWARE)
08: AD9 (SOFTWARE)
09: AE1 (SOFTWARE)
10: AE2 (SOFTWARE)
11: AE3 (SOFTWARE)
12: AE4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
HOH B:513 , HOH B:514 , HOH E:212 , HOH E:213
binding site for residue MG B 401
02
AC3
SOFTWARE
ALA B:6 , PRO B:7 , MET B:8 , GLU B:9 , PHE B:33 , GLN B:68 , ASN B:95 , LYS B:139 , HIS B:168 , TYR B:176 , ASN B:200 , GLY B:201 , GLU B:202 , GLY B:224 , ARG B:225 , HOH B:526 , HOH B:543 , HOH B:578 , U E:16
binding site for residue FMN B 402
03
AD3
SOFTWARE
HOH D:211 , G E:34 , HOH E:201 , HOH E:202 , HOH E:204
binding site for residue MG D 108
04
AD5
SOFTWARE
G E:15 , HOH E:246 , HOH E:247 , HOH E:256 , HOH E:257
binding site for residue MN E 101
05
AD6
SOFTWARE
HOH E:206 , HOH E:207 , HOH E:208 , HOH E:209 , HOH E:210 , HOH E:211
binding site for residue MG E 102
06
AD7
SOFTWARE
G E:18 , HOH E:214 , HOH E:215 , HOH E:216 , HOH E:217
binding site for residue MG E 103
07
AD8
SOFTWARE
G E:22 , G E:44 , U E:45 , G E:46 , HOH E:218 , HOH E:219
binding site for residue MG E 104
08
AD9
SOFTWARE
HOH E:220 , HOH E:221 , HOH E:222 , HOH E:223 , HOH E:224 , HOH E:225
binding site for residue MG E 105
09
AE1
SOFTWARE
HOH B:515 , C E:17 , G E:19 , HOH E:226 , HOH E:227 , HOH E:228
binding site for residue MG E 106
10
AE2
SOFTWARE
U E:51 , HOH E:229 , HOH E:230 , HOH E:231 , HOH E:232 , HOH E:233
binding site for residue MG E 107
11
AE3
SOFTWARE
U E:8 , U E:12 , HOH E:234 , HOH E:235 , HOH E:236 , HOH E:237 , HOH E:238
binding site for residue MG E 108
12
AE4
SOFTWARE
HOH E:239 , HOH E:240 , HOH E:241 , HOH E:242 , HOH E:243 , HOH E:244
binding site for residue MG E 109
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (527 KB)
Header - Asym.Unit
Biol.Unit 1 (178 KB)
Header - Biol.Unit 1
Biol.Unit 2 (171 KB)
Header - Biol.Unit 2
Biol.Unit 3 (176 KB)
Header - Biol.Unit 3
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