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4YCO
Asym. Unit
Info
Asym.Unit (527 KB)
Biol.Unit 1 (178 KB)
Biol.Unit 2 (171 KB)
Biol.Unit 3 (176 KB)
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(1)
Title
:
E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) IN COMPLEX WITH TRNAPHE
Authors
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Date
:
20 Feb 15 (Deposition) - 22 Apr 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Trna Modification, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Major Reorientation Of Trna Substrates Defines Specificity Of Dihydrouridine Synthases.
Proc. Natl. Acad. Sci. Usa V. 112 6033 2015
[
close entry info
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Hetero Components
(3, 31)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
3
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
MG
25
Ligand/Ion
MAGNESIUM ION
3
MN
3
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:6 , PRO A:7 , MET A:8 , GLU A:9 , PHE A:33 , GLN A:68 , ASN A:95 , LYS A:139 , HIS A:168 , TYR A:176 , ASN A:200 , GLY A:201 , GLU A:202 , GLY A:224 , ARG A:225 , HOH A:511 , HOH A:513 , HOH A:551 , U D:16
binding site for residue FMN A 401
02
AC2
SOFTWARE
HOH B:513 , HOH B:514 , HOH E:212 , HOH E:213
binding site for residue MG B 401
03
AC3
SOFTWARE
ALA B:6 , PRO B:7 , MET B:8 , GLU B:9 , PHE B:33 , GLN B:68 , ASN B:95 , LYS B:139 , HIS B:168 , TYR B:176 , ASN B:200 , GLY B:201 , GLU B:202 , GLY B:224 , ARG B:225 , HOH B:526 , HOH B:543 , HOH B:578 , U E:16
binding site for residue FMN B 402
04
AC4
SOFTWARE
ALA C:6 , PRO C:7 , MET C:8 , GLU C:9 , PHE C:33 , GLN C:68 , ASN C:95 , LYS C:139 , HIS C:168 , TYR C:176 , ASN C:200 , GLY C:201 , GLU C:202 , GLY C:224 , ARG C:225 , HOH C:513 , HOH C:566 , HOH C:567 , U F:16
binding site for residue FMN C 401
05
AC5
SOFTWARE
G D:15 , HOH D:249 , HOH D:250 , HOH D:251 , HOH D:253 , HOH D:254
binding site for residue MN D 101
06
AC6
SOFTWARE
HOH D:215 , HOH D:216 , HOH D:217 , HOH D:218 , HOH D:219 , HOH D:220
binding site for residue MG D 102
07
AC7
SOFTWARE
U D:51 , HOH D:221 , HOH D:222 , HOH D:223 , HOH D:224 , HOH D:225
binding site for residue MG D 103
08
AC8
SOFTWARE
HOH D:226 , HOH D:227 , HOH D:228 , HOH D:229 , HOH D:230 , HOH D:231
binding site for residue MG D 104
09
AC9
SOFTWARE
HOH D:232 , HOH D:233 , HOH D:234 , HOH D:235 , HOH D:236 , HOH D:237
binding site for residue MG D 105
10
AD1
SOFTWARE
G D:18 , HOH D:201 , HOH D:212 , HOH D:214 , HOH D:238 , HOH D:239
binding site for residue MG D 106
11
AD2
SOFTWARE
HOH A:501 , C D:17 , G D:19 , HOH D:240 , HOH D:241 , HOH D:242
binding site for residue MG D 107
12
AD3
SOFTWARE
HOH D:211 , G E:34 , HOH E:201 , HOH E:202 , HOH E:204
binding site for residue MG D 108
13
AD4
SOFTWARE
U D:45 , G D:46 , HOH D:243
binding site for residue MG D 109
14
AD5
SOFTWARE
G E:15 , HOH E:246 , HOH E:247 , HOH E:256 , HOH E:257
binding site for residue MN E 101
15
AD6
SOFTWARE
HOH E:206 , HOH E:207 , HOH E:208 , HOH E:209 , HOH E:210 , HOH E:211
binding site for residue MG E 102
16
AD7
SOFTWARE
G E:18 , HOH E:214 , HOH E:215 , HOH E:216 , HOH E:217
binding site for residue MG E 103
17
AD8
SOFTWARE
G E:22 , G E:44 , U E:45 , G E:46 , HOH E:218 , HOH E:219
binding site for residue MG E 104
18
AD9
SOFTWARE
HOH E:220 , HOH E:221 , HOH E:222 , HOH E:223 , HOH E:224 , HOH E:225
binding site for residue MG E 105
19
AE1
SOFTWARE
HOH B:515 , C E:17 , G E:19 , HOH E:226 , HOH E:227 , HOH E:228
binding site for residue MG E 106
20
AE2
SOFTWARE
U E:51 , HOH E:229 , HOH E:230 , HOH E:231 , HOH E:232 , HOH E:233
binding site for residue MG E 107
21
AE3
SOFTWARE
U E:8 , U E:12 , HOH E:234 , HOH E:235 , HOH E:236 , HOH E:237 , HOH E:238
binding site for residue MG E 108
22
AE4
SOFTWARE
HOH E:239 , HOH E:240 , HOH E:241 , HOH E:242 , HOH E:243 , HOH E:244
binding site for residue MG E 109
23
AE5
SOFTWARE
G F:15 , HOH F:253 , HOH F:254 , HOH F:255 , HOH F:256 , HOH F:292
binding site for residue MN F 101
24
AE6
SOFTWARE
HOH F:208 , HOH F:209 , HOH F:210 , HOH F:211 , HOH F:212 , HOH F:213
binding site for residue MG F 102
25
AE7
SOFTWARE
HOH F:214 , HOH F:215 , HOH F:216 , HOH F:217 , HOH F:218 , HOH F:219
binding site for residue MG F 103
26
AE8
SOFTWARE
U F:51 , HOH F:220 , HOH F:221 , HOH F:222 , HOH F:223 , HOH F:224
binding site for residue MG F 104
27
AE9
SOFTWARE
HOH D:213 , G F:18 , HOH F:201 , HOH F:207 , HOH F:225 , HOH F:226
binding site for residue MG F 105
28
AF1
SOFTWARE
U F:45 , G F:46 , HOH F:227 , HOH F:228 , HOH F:229 , HOH F:230
binding site for residue MG F 106
29
AF2
SOFTWARE
U F:12 , HOH F:231 , HOH F:232 , HOH F:233 , HOH F:234 , HOH F:235
binding site for residue MG F 107
30
AF3
SOFTWARE
HOH F:236 , HOH F:237 , HOH F:238 , HOH F:239 , HOH F:240
binding site for residue MG F 108
31
AF4
SOFTWARE
HOH C:511 , C F:17 , G F:19 , HOH F:241 , HOH F:242 , HOH F:243
binding site for residue MG F 109
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Chain A
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Chain E
Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (527 KB)
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Biol.Unit 1 (178 KB)
Header - Biol.Unit 1
Biol.Unit 2 (171 KB)
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Biol.Unit 3 (176 KB)
Header - Biol.Unit 3
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