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4YBM
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (39 KB)
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Title
:
CRYSTAL STRUCTURE OF TRIM24 PHD-BROMODOMAIN COMPLEXED WITH N-{6-[3-(BENZYLOXY)PHENOXY]-1,3-DIMETHYL-2-OXO-2,3-DIHYDRO-1H-1,3-BENZODIAZOL-5-YL}-3,4-DIMETHOXYBENZENE-1-SULFONAMIDE (7B)
Authors
:
G. Poncet-Montange, W. Palmer, P. Jones
Date
:
18 Feb 15 (Deposition) - 24 Jun 15 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Center For Biomolecular Structure And Function, Bromodomain, Trim24, Inhibitor, Transcription-Transcription Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. S. Palmer, G. Poncet-Montange, G. Liu, A. Petrocchi, N. Reyna, G. Subramanian, J. Theroff, A. Yau, M. Kost-Alimova, J. P. Bardenhagen, E. Leo, H. E. Shepard, T. N. Tieu, X. Shi, Y. Zhan, S. Zhao, M. C. Barton, G. Draetta, C. Toniatti, P. Jones, M. Geck Do, J. N. Andersen
Structure-Guided Design Of Iacs-9571, A Selective High-Affinity Dual Trim24-Brpf1 Bromodomain Inhibitor.
J. Med. Chem. V. 59 1440 2016
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: N-{6-[3-(BENZYLOXY)PHENOXY]-1,3-DI... (4BJa)
1b: N-{6-[3-(BENZYLOXY)PHENOXY]-1,3-DI... (4BJb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
4BJ
2
Ligand/Ion
N-{6-[3-(BENZYLOXY)PHENOXY]-1,3-DIMETHYL-2-OXO-2,3-DIHYDRO-1H-BENZIMIDAZOL-5-YL}-3,4-DIMETHOXYBENZENESULFONAMIDE
2
GOL
4
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
4
ZN
4
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:829 , CYS A:832 , HIS A:849 , CYS A:852
binding site for residue ZN A 1101
02
AC2
SOFTWARE
CYS A:841 , CYS A:844 , CYS A:867 , CYS A:870
binding site for residue ZN A 1102
03
AC3
SOFTWARE
ALA A:977 , GLU A:978 , PHE A:979 , ASN A:980 , GLU A:981 , HOH A:1477
binding site for residue GOL A 1103
04
AC4
SOFTWARE
TYR A:936 , LYS A:937 , ILE A:938 , ILE A:939 , LYS A:940
binding site for residue GOL A 1104
05
AC5
SOFTWARE
LEU A:922 , ALA A:923 , PHE A:924 , VAL A:928 , PRO A:929 , PHE A:979 , ASN A:980 , GLU A:985 , HOH A:1325 , HOH A:1338 , TYR B:936 , THR B:947 , ARG B:951 , TYR B:956 , MET B:958 , HOH B:1286 , HOH B:1309 , HOH B:1379
binding site for residue 4BJ B 1101
06
AC6
SOFTWARE
PRO A:927 , LEU A:930 , TYR A:936 , LEU B:922 , ALA B:923 , VAL B:928 , PRO B:929 , VAL B:932 , PHE B:979 , ASN B:980 , VAL B:986 , HOH B:1226 , HOH B:1232 , HOH B:1241 , HOH B:1271 , HOH B:1399
binding site for residue 4BJ B 1102
07
AC7
SOFTWARE
ARG B:970 , GLU B:998 , HOH B:1366
binding site for residue SO4 B 1103
08
AC8
SOFTWARE
CYS B:829 , CYS B:832 , HIS B:849 , CYS B:852
binding site for residue ZN B 1104
09
AC9
SOFTWARE
CYS B:841 , CYS B:844 , CYS B:867 , CYS B:870
binding site for residue ZN B 1105
10
AD1
SOFTWARE
PRO B:902 , ARG B:906 , HOH B:1234 , HOH B:1343
binding site for residue GOL B 1106
11
AD2
SOFTWARE
ALA B:977 , GLU B:978 , PHE B:979 , ASN B:980
binding site for residue GOL B 1107
12
AD3
SOFTWARE
ARG B:871 , ASP B:872 , LEU B:873 , ARG B:910
binding site for residue SO4 B 1108
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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