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4YBH
Biol. Unit 1
Info
Asym.Unit (142 KB)
Biol.Unit 1 (265 KB)
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Title
:
CRYSTAL STRUCTURE OF THE HUMAN RAGE ECTODOMAIN (VC1C2 FRAGMENT) IN COMPLEX WITH HUMAN S100A6
Authors
:
L. Yatime, G. R. Andersen
Date
:
18 Feb 15 (Deposition) - 02 Mar 16 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Signaling Complex, Pattern Recognition Receptor, Dimerization, Ef- Hand Calcium Binding Protein, Immunoglobulin Domain, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Yatime, C. Betzer, R. K. Jensen, S. Mortensen, P. H. Jensen, G. R. Andersen
The Structure Of The Rage:S100A6 Complex Reveals A Unique Mode Of Homodimerization For S100 Proteins.
Structure V. 24 2043 2016
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
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No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:160 , ASP A:201 , CL A:406 , CL A:407
binding site for residue ZN A 401
02
AC2
SOFTWARE
ASP A:128 , HIS A:180 , GLU A:182
binding site for residue ZN A 402
03
AC3
SOFTWARE
GLU A:32 , HIS A:217 , HOH A:507 , HOH A:550
binding site for residue ZN A 403
04
AC4
SOFTWARE
HIS A:270 , CL A:408 , HOH A:544
binding site for residue ZN A 404
05
AC5
SOFTWARE
GLU A:132 , ARG A:228 , ZN A:412 , PHE B:16 , HIS B:17 , HIS B:27
binding site for residue CL A 405
06
AC6
SOFTWARE
ASP A:160 , ASP A:201 , ZN A:401 , CL A:407
binding site for residue CL A 406
07
AC7
SOFTWARE
ASP A:160 , ASP A:201 , ZN A:401 , CL A:406 , HOH A:640 , HOH B:206
binding site for residue CL A 407
08
AC8
SOFTWARE
HIS A:270 , ZN A:404
binding site for residue CL A 408
09
AC9
SOFTWARE
LYS A:169
binding site for residue ACT A 409
10
AD1
SOFTWARE
ARG A:77 , LEU A:79 , VAL A:302 , THR A:304
binding site for residue ACT A 410
11
AD2
SOFTWARE
THR A:55 , ARG A:57 , TRP A:72 , ASP A:93
binding site for residue ACT A 411
12
AD3
SOFTWARE
GLU A:132 , CL A:405 , HIS B:17 , HIS B:27
binding site for residue ZN A 412
13
AD4
SOFTWARE
CYS B:3 , ARG B:55 , ASP B:59 , HOH B:201 , HOH B:205
binding site for residue ZN B 101
14
AD5
SOFTWARE
GLU B:41 , CL B:103
binding site for residue ZN B 102
15
AD6
SOFTWARE
GLU B:41 , ZN B:102
binding site for residue CL B 103
16
AD7
SOFTWARE
SER B:20 , GLU B:23 , ASP B:25 , THR B:28 , GLU B:33 , HOH B:207
binding site for residue CA B 104
17
AD8
SOFTWARE
ASP B:61 , ASN B:63 , ASP B:65 , GLU B:67 , GLU B:72 , HOH B:224
binding site for residue CA B 105
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (142 KB)
Header - Asym.Unit
Biol.Unit 1 (265 KB)
Header - Biol.Unit 1
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