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4YB8
Asym. Unit
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Asym.Unit (425 KB)
Biol.Unit 1 (419 KB)
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(1)
Title
:
CA. KORARCHAEUM CRYPTOFILUM DINUCLEOTIDE FORMING ACETYL-COENZYME A SYNTHETASE 1 IN COMPLEX WITH PHOSPHATE AND ADP
Authors
:
R. H. -J. Weisse, A. J. Scheidig
Date
:
18 Feb 15 (Deposition) - 27 Jan 16 (Release) - 10 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dinucleotide Forming Acetyl-Coa Synthetase, Complex, Acd, Ligase
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Reference
:
R. H. Weie, A. Faust, M. Schmidt, P. Schonheit, A. J. Scheidig
Structure Of Ndp-Forming Acetyl-Coa Synthetase Acd1 Reveals A Large Rearrangement For Phosphoryl Transfer.
Proc. Natl. Acad. Sci. Usa V. 113 E519 2016
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
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No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
NA
3
Ligand/Ion
SODIUM ION
4
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:300 , SER A:326 , LYS A:327 , GLY B:54 , PHE B:55
binding site for residue NA A 501
2
AC2
SOFTWARE
SER A:160 , GLY A:161 , ALA A:162 , HIS A:254 , NA A:503 , HOH A:718 , HOH A:719 , HOH A:720 , GLY C:308 , GLY C:309 , NA C:501 , HOH C:683
binding site for residue PO4 A 502
3
AC3
SOFTWARE
GLU A:213 , HIS A:254 , PO4 A:502 , HOH A:720
binding site for residue NA A 503
4
AC4
SOFTWARE
VAL B:58 , LYS B:60 , VAL B:67 , HIS B:68 , LYS B:69 , SER B:70 , GLN B:111 , GLU B:112 , ALA B:114 , VAL B:223 , ASP B:224 , MG B:301
binding site for residue ADP B 300
5
AC5
SOFTWARE
ADP B:300
binding site for residue MG B 301
6
AC6
SOFTWARE
PO4 A:502 , HOH A:718 , HOH A:719 , ASP C:351 , HOH C:683
binding site for residue NA C 501
7
AC7
SOFTWARE
GLY A:308 , GLY A:309 , SER C:160 , GLY C:161 , ALA C:162 , HIS C:254 , HOH C:684
binding site for residue PO4 C 502
8
AC8
SOFTWARE
LYS D:60 , HIS D:68 , LYS D:69 , SER D:70 , GLN D:111 , GLU D:112 , PHE D:113 , ALA D:114 , PRO D:212 , VAL D:223 , ASP D:224 , ARG D:226 , MG D:301
binding site for residue ADP D 300
9
AC9
SOFTWARE
ASN D:211 , ASP D:224 , ADP D:300
binding site for residue MG D 301
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Exons
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Asymmetric Unit 1
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Asym.Unit (425 KB)
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