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4Y8T
Asym. Unit
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Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
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(1)
Title
:
YEAST 20S PROTEASOME BETA2-H116D MUTANT IN COMPLEX WITH AC-PAE-EP
Authors
:
E. M. Huber, M. Groll
Date
:
16 Feb 15 (Deposition) - 17 Jun 15 (Release) - 01 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex, Proteasome, Mutant, Inhibitor, Binding Analysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Huber, G. De Bruin, W. Heinemeyer, G. Paniagua Soriano, H. S. Overkleeft, M. Groll
Systematic Analyses Of Substrate Preferences Of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J. Am. Chem. Soc. V. 137 7835 2015
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: (4S)-4-AMINO-5-HYDROXYPENTANOIC AC... (GAUa)
2b: (4S)-4-AMINO-5-HYDROXYPENTANOIC AC... (GAUb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
4a: N-PROPANOL (POLa)
4b: N-PROPANOL (POLb)
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No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
GAU
2
Mod. Amino Acid
(4S)-4-AMINO-5-HYDROXYPENTANOIC ACID
3
MG
7
Ligand/Ion
MAGNESIUM ION
4
POL
2
Mod. Amino Acid
N-PROPANOL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR G:8 , TYR G:119 , ARG G:122 , ALA G:123 , MET G:125
binding site for residue MG G 301
02
AC2
SOFTWARE
ALA I:174 , ASP I:177 , SER I:180 , ASP I:204 , HOH I:416
binding site for residue MG I 301
03
AC3
SOFTWARE
ARG K:19 , ALA K:165 , ASP K:168 , ALA K:169 , SER K:171 , ASP W:204
binding site for residue MG K 301
04
AC4
SOFTWARE
ARG N:19 , ILE N:163 , ASP N:166 , SER N:169 , HOH N:323 , LEU a:34
binding site for residue MG N 201
05
AC5
SOFTWARE
ASP L:222 , ILE V:163 , ASP V:166 , SER V:169 , HOH V:416
binding site for residue MG V 301
06
AC6
SOFTWARE
ASP I:204 , ARG Y:19 , ALA Y:165 , ASP Y:168 , ALA Y:169 , SER Y:171 , HOH Y:417
binding site for residue MG Y 301
07
AC7
SOFTWARE
THR Z:192 , HIS Z:195 , VAL Z:198
binding site for residue MG Z 301
08
AC8
SOFTWARE
THR N:1 , THR N:20 , THR N:21 , THR N:31 , ARG N:45 , GLY N:47 , ALA N:49 , SER N:129 , SER N:168 , HOH N:302 , ACE c:1 , PRO c:2
binding site for Ligand residues POL c 5 through ALA c 3 bound to THR N 1
09
AC9
SOFTWARE
THR N:1 , THR N:20 , THR N:31 , ARG N:45 , GLY N:47 , ALA N:49 , HOH N:302 , ALA c:3 , POL c:5
binding site for Ligand GAU c 4 bound to THR N 1
10
AD1
SOFTWARE
THR b:1 , THR b:20 , THR b:21 , THR b:31 , ARG b:45 , GLY b:47 , ALA b:49 , SER b:129 , SER b:168 , HOH b:202 , HOH b:204 , ACE d:1 , PRO d:2
binding site for Ligand residues POL d 5 through ALA d 3 bound to THR b 1
11
AD2
SOFTWARE
THR b:1 , THR b:20 , THR b:31 , ARG b:45 , GLY b:47 , ALA b:49 , HOH b:202 , HOH b:204 , ALA d:3 , POL d:5
binding site for Ligand GAU d 4 bound to THR b 1
12
AD3
SOFTWARE
HIS H:114 , ASP H:116 , SER H:118 , THR N:21 , ALA N:49 , HOH N:301 , ALA c:3 , HOH c:101
binding site for Di-peptide ACE c 1 and PRO c 2
13
AD4
SOFTWARE
HIS V:114 , ASP V:116 , SER V:118 , THR b:21 , ALA b:49 , ALA d:3
binding site for Di-peptide ACE d 1 and PRO d 2
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