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4Y81
Asym. Unit
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Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
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(1)
Title
:
YEAST 20S PROTEASOME IN COMPLEX WITH AC-PAY-EP
Authors
:
E. M. Huber, M. Groll
Date
:
16 Feb 15 (Deposition) - 17 Jun 15 (Release) - 01 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex, Proteasome, Inhibitor, Binding Analysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Huber, G. De Bruin, W. Heinemeyer, G. Paniagua Soriano, H. S. Overkleeft, M. Groll
Systematic Analyses Of Substrate Preferences Of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J. Am. Chem. Soc. V. 137 7835 2015
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Hetero Components
(6, 25)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
5a: N-PROPANOL (POLa)
5b: N-PROPANOL (POLb)
5c: N-PROPANOL (POLc)
5d: N-PROPANOL (POLd)
6a: 4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PH... (TYEa)
6b: 4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PH... (TYEb)
6c: 4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PH... (TYEc)
6d: 4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PH... (TYEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
4
Mod. Amino Acid
ACETYL GROUP
2
CL
2
Ligand/Ion
CHLORIDE ION
3
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
MG
9
Ligand/Ion
MAGNESIUM ION
5
POL
4
Mod. Amino Acid
N-PROPANOL
6
TYE
4
Mod. Amino Acid
4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN C:115 , PRO C:126 , PHE C:127 , PRO C:150
binding site for residue MG C 301
02
AC2
SOFTWARE
THR G:8 , TYR G:119 , ARG G:122 , ALA G:123 , MET G:125
binding site for residue MG G 301
03
AC3
SOFTWARE
ARG G:111 , ASN G:114 , TYR H:69
binding site for residue CL G 302
04
AC4
SOFTWARE
ALA I:174 , ASP I:177 , SER I:180
binding site for residue MG I 301
05
AC5
SOFTWARE
ASP I:204 , ALA Y:165 , ASP Y:168 , ALA Y:169 , SER Y:171 , HOH Y:401
binding site for residue MG I 302
06
AC6
SOFTWARE
ALA K:165 , ASP K:168 , ALA K:169 , SER K:171 , ASP W:204
binding site for residue MG K 301
07
AC7
SOFTWARE
THR K:1 , GLY K:47 , MET K:97 , GLY K:98 , SER K:117 , GLY K:130 , SER K:131 , TYE c:4 , POL c:5
binding site for residue MES K 302
08
AC8
SOFTWARE
ASP L:222 , ILE V:163 , TRP V:164 , ASP V:166 , SER V:169
binding site for residue MG L 301
09
AC9
SOFTWARE
ILE N:163 , ASP N:166 , SER N:169 , LEU a:34
binding site for residue MG N 201
10
AD1
SOFTWARE
ARG U:111 , ASN U:114 , TYR V:69
binding site for residue CL U 301
11
AD2
SOFTWARE
GLN X:118 , THR X:124
binding site for residue MG X 201
12
AD3
SOFTWARE
ARG Z:28 , THR Z:192 , HIS Z:195 , VAL Z:198 , ASP Z:222
binding site for residue MG Z 301
13
AD4
SOFTWARE
THR Y:1 , GLY Y:47 , SER Y:96 , MET Y:97 , GLY Y:98 , SER Y:117 , GLY Y:130 , SER Y:131 , HOH Y:411 , TYE e:4 , POL e:5
binding site for residue MES e 101
14
AD5
SOFTWARE
THR K:1 , ARG K:19 , ALA K:20 , THR K:21 , VAL K:31 , GLY K:47 , ALA K:49 , GLN K:53 , TYR K:170 , MES K:302 , ACE c:1 , PRO c:2
binding site for Ligand residues POL c 5 through ALA c 3 bound to THR K 1
15
AD6
SOFTWARE
THR K:1 , VAL K:31 , GLY K:47 , ALA K:49 , GLN K:53 , MES K:302 , ALA c:3 , POL c:5
binding site for Ligand TYE c 4 bound to THR K 1
16
AD7
SOFTWARE
THR N:1 , ARG N:19 , THR N:20 , THR N:21 , ARG N:45 , GLY N:47 , ALA N:49 , GLN N:53 , SER N:168 , ACE d:1 , PRO d:2 , HOH d:101
binding site for Ligand residues POL d 5 through ALA d 3 bound to THR N 1
17
AD8
SOFTWARE
THR N:1 , THR N:20 , ARG N:45 , GLY N:47 , ALA N:49 , GLN N:53 , ALA d:3 , POL d:5 , HOH d:101
binding site for Ligand TYE d 4 bound to THR N 1
18
AD9
SOFTWARE
THR Y:1 , ARG Y:19 , ALA Y:20 , THR Y:21 , VAL Y:31 , GLY Y:47 , ALA Y:49 , GLN Y:53 , TYR Y:170 , ACE e:1 , PRO e:2 , MES e:101
binding site for Ligand residues POL e 5 through ALA e 3 bound to THR Y 1
19
AE1
SOFTWARE
THR Y:1 , VAL Y:31 , GLY Y:47 , ALA Y:49 , GLN Y:53 , ALA e:3 , POL e:5 , MES e:101
binding site for Ligand TYE e 4 bound to THR Y 1
20
AE2
SOFTWARE
THR b:1 , ARG b:19 , THR b:20 , THR b:21 , ARG b:45 , GLY b:47 , ALA b:49 , GLN b:53 , SER b:168 , HOH b:208 , ACE f:1 , PRO f:2 , HOH f:101
binding site for Ligand residues POL f 5 through ALA f 3 bound to THR b 1
21
AE3
SOFTWARE
THR b:1 , THR b:20 , ARG b:45 , GLY b:47 , ALA b:49 , GLN b:53 , HOH b:208 , ALA f:3 , POL f:5 , HOH f:101
binding site for Ligand TYE f 4 bound to THR b 1
22
AE4
SOFTWARE
THR K:21 , ALA K:49 , ALA c:3
binding site for Di-peptide ACE c 1 and PRO c 2
23
AE5
SOFTWARE
HIS H:114 , THR N:21 , THR N:22 , ALA N:49 , ALA d:3
binding site for Di-peptide ACE d 1 and PRO d 2
24
AE6
SOFTWARE
THR Y:21 , ALA Y:49 , ALA e:3
binding site for Di-peptide ACE e 1 and PRO e 2
25
AE7
SOFTWARE
HIS V:114 , THR b:21 , THR b:22 , ALA b:49 , ALA f:3
binding site for Di-peptide ACE f 1 and PRO f 2
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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