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4Y55
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BUFFALO LACTOPEROXIDASE WITH RHODANIDE AT 2.09 ANGSTROM RESOLUTION
Authors
:
A. Gupta, T. K. Tyagi, P. Kaur, S. Sharma, T. P. Singh
Date
:
11 Feb 15 (Deposition) - 25 Mar 15 (Release) - 25 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lactoperoxidase, Oxidoreductase, Substrate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gupta, T. K. Tyagi, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Buffalo Lactoperoxidase With Rhodanide At 2. 09 Angstrom Resolution
To Be Published
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Hetero Components
(9, 27)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: IODIDE ION (IODa)
4b: IODIDE ION (IODb)
4c: IODIDE ION (IODc)
4d: IODIDE ION (IODd)
4e: IODIDE ION (IODe)
4f: IODIDE ION (IODf)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7a: NITRATE ION (NO3a)
7b: NITRATE ION (NO3b)
7c: NITRATE ION (NO3c)
7d: NITRATE ION (NO3d)
8a: THIOCYANATE ION (SCNa)
8b: THIOCYANATE ION (SCNb)
8c: THIOCYANATE ION (SCNc)
8d: THIOCYANATE ION (SCNd)
9a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
IOD
6
Ligand/Ion
IODIDE ION
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NO3
4
Ligand/Ion
NITRATE ION
8
SCN
4
Ligand/Ion
THIOCYANATE ION
9
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
binding site for residue CA A 611
02
AC2
SOFTWARE
PHE A:229
binding site for residue IOD A 612
03
AC3
SOFTWARE
PRO A:236 , PRO A:424
binding site for residue IOD A 613
04
AC4
SOFTWARE
ARG A:397 , LYS A:561
binding site for residue IOD A 614
05
AC5
SOFTWARE
TRP A:46 , VAL A:342
binding site for residue IOD A 615
06
AC6
SOFTWARE
LYS A:462 , THR A:463
binding site for residue IOD A 616
07
AC7
SOFTWARE
TYR A:85 , LEU A:86 , ASP A:87 , LYS A:411 , HOH A:840
binding site for residue NO3 A 617
08
AC8
SOFTWARE
ARG A:31 , TYR A:331 , ARG A:527 , HOH A:715
binding site for residue NO3 A 618
09
AC9
SOFTWARE
GLU A:77 , ASN A:80 , PRO A:145
binding site for residue NO3 A 619
10
AD1
SOFTWARE
HIS A:377 , HIS A:429 , HOH A:731
binding site for residue NO3 A 620
11
AD2
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:417 , GLN A:423 , LEU A:433 , ILE A:436 , ARG A:440 , SCN A:624 , HOH A:760 , HOH A:869
binding site for residue HEM A 621
12
AD3
SOFTWARE
SER A:359 , LEU A:361 , PRO A:367 , LYS A:402
binding site for residue SCN A 622
13
AD4
SOFTWARE
PRO A:149 , ASN A:419
binding site for residue SCN A 623
14
AD5
SOFTWARE
ARG A:255 , HEM A:621 , HOH A:868 , HOH A:869
binding site for residue SCN A 624
15
AD6
SOFTWARE
SEP A:198 , ARG A:202
binding site for residue SCN A 625
16
AD7
SOFTWARE
TRP A:530
binding site for residue IOD A 626
17
AD8
SOFTWARE
ASN A:95 , ARG A:96 , ARG A:504 , HIS A:565 , GLN A:568 , HOH A:810 , HOH A:820 , HOH A:831
binding site for Poly-Saccharide residues NAG A 601 through BMA A 603 bound to ASN A 95
18
AD9
SOFTWARE
ASN A:205 , SER A:208 , VAL A:215 , GLN A:217 , TRP A:220 , HOH A:833
binding site for Poly-Saccharide residues NAG A 604 through NAG A 605 bound to ASN A 205
19
AE1
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , HOH A:706 , HOH A:759
binding site for Poly-Saccharide residues NAG A 606 through MAN A 608 bound to ASN A 241
20
AE2
SOFTWARE
ASN A:332
binding site for Poly-Saccharide residues NAG A 609 through NAG A 610 bound to ASN A 332
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Chain A
Asymmetric Unit 1
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