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4XYM
Asym. Unit
Info
Asym.Unit (436 KB)
Biol.Unit 1 (428 KB)
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(1)
Title
:
CA. KORARCHAEUM CRYPTOFILUM DINUCLEOTIDE FORMING ACETYL-COENZYME A SYNTHETASE 1 IN COMPLEX WITH COENZYME A, CA-AMPCP AND HGCL+
Authors
:
R. H. -J. Weisse, A. J. Scheidig
Date
:
02 Feb 15 (Deposition) - 27 Jan 16 (Release) - 10 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dinucleotide Forming Acetyl-Coa Synthetase, Complex, Acd, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. H. Weie, A. Faust, M. Schmidt, P. Schonheit, A. J. Scheidig
Structure Of Ndp-Forming Acetyl-Coa Synthetase Acd1 Reveals A Large Rearrangement For Phosphoryl Transfer.
Proc. Natl. Acad. Sci. Usa V. 113 E519 2016
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENO... (A12a)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENO... (A12b)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
4a: COENZYME A (COAa)
4b: COENZYME A (COAb)
5a: MERCURY (II) ION (HGa)
5b: MERCURY (II) ION (HGb)
5c: MERCURY (II) ION (HGc)
5d: MERCURY (II) ION (HGd)
5e: MERCURY (II) ION (HGe)
5f: MERCURY (II) ION (HGf)
5g: MERCURY (II) ION (HGg)
5h: MERCURY (II) ION (HGh)
6a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A12
2
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2
CA
2
Ligand/Ion
CALCIUM ION
3
CL
6
Ligand/Ion
CHLORIDE ION
4
COA
2
Ligand/Ion
COENZYME A
5
HG
8
Ligand/Ion
MERCURY (II) ION
6
NA
1
Ligand/Ion
SODIUM ION
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:46 , PRO A:47 , PRO A:59 , HG A:502
binding site for residue CL A 501
02
AC2
SOFTWARE
ASN A:46 , ALA A:49 , CYS A:57 , TYR A:58 , PRO A:59 , CL A:501
binding site for residue HG A 502
03
AC3
SOFTWARE
LYS A:60 , VAL A:61 , ASP A:86 , HG A:504
binding site for residue CL A 503
04
AC4
SOFTWARE
VAL A:61 , VAL A:83 , ASP A:86 , CYS A:87 , CL A:503
binding site for residue HG A 504
05
AC5
SOFTWARE
MET A:209
binding site for residue HG A 505
06
AC6
SOFTWARE
LEU A:380 , TYR A:381 , GLY A:412 , VAL A:414 , PRO A:437 , HG A:507
binding site for residue CL A 506
07
AC7
SOFTWARE
ALA A:310 , TYR A:381 , CYS A:382 , VAL A:414 , CL A:506 , HOH A:691
binding site for residue HG A 507
08
AC8
SOFTWARE
GLY A:17 , SER A:19 , LYS A:24 , ILE A:25 , ASN A:46 , PRO A:47 , VAL A:75 , PRO A:76 , VAL A:83 , ILE A:98 , THR A:99 , SER A:100 , ASN A:129 , ILE A:130 , HOH A:683 , HOH A:712 , HOH A:715 , HOH A:751 , HOH A:754 , HOH A:779
binding site for residue COA A 508
09
AC9
SOFTWARE
LYS B:60 , VAL B:67 , LYS B:69 , SER B:70 , VAL B:75 , GLN B:111 , GLU B:112 , PHE B:113 , ALA B:114 , GLU B:119 , ASN B:211 , PRO B:212 , VAL B:223 , ASP B:224 , CA B:301 , HOH B:409 , HOH B:414 , HOH B:447 , HOH B:449 , HOH B:452
binding site for residue A12 B 300
10
AD1
SOFTWARE
ASN B:211 , ASP B:224 , A12 B:300 , HOH B:409 , HOH B:412 , HOH B:413
binding site for residue CA B 301
11
AD2
SOFTWARE
ASN C:46 , PRO C:47 , ALA C:49 , PRO C:59 , HG C:502
binding site for residue CL C 501
12
AD3
SOFTWARE
ASN C:46 , ALA C:49 , CYS C:57 , TYR C:58 , CL C:501
binding site for residue HG C 502
13
AD4
SOFTWARE
VAL C:61 , ASP C:86 , HG C:504 , HOH C:603
binding site for residue CL C 503
14
AD5
SOFTWARE
VAL C:61 , VAL C:83 , ASP C:86 , CYS C:87 , CL C:503
binding site for residue HG C 504
15
AD6
SOFTWARE
MET C:209 , PHE C:284
binding site for residue HG C 505
16
AD7
SOFTWARE
TYR C:381 , GLY C:412 , VAL C:414 , PRO C:437 , HG C:507
binding site for residue CL C 506
17
AD8
SOFTWARE
ALA C:310 , TYR C:381 , CYS C:382 , CL C:506 , HOH C:640
binding site for residue HG C 507
18
AD9
SOFTWARE
MET A:355 , VAL C:16 , GLY C:17 , SER C:19 , LYS C:24 , ASN C:46 , PRO C:47 , VAL C:75 , PRO C:76 , VAL C:83 , THR C:99 , SER C:100 , HOH C:603 , HOH C:604 , HOH C:650 , HOH C:655 , HOH C:658 , HOH C:678 , HOH C:679 , HOH C:685 , HOH C:686 , HOH C:708 , HOH C:714 , HOH C:751
binding site for residue COA C 508
19
AE1
SOFTWARE
GLY D:31 , ASP D:190 , ALA D:191 , ARG D:194 , HOH D:442
binding site for residue NA D 301
20
AE2
SOFTWARE
LYS D:60 , VAL D:67 , LYS D:69 , SER D:70 , VAL D:75 , GLN D:111 , GLU D:112 , PHE D:113 , ALA D:114 , GLU D:119 , ASN D:211 , PRO D:212 , VAL D:223 , ASP D:224 , CA D:303 , HOH D:417 , HOH D:433 , HOH D:436 , HOH D:440 , HOH D:446
binding site for residue A12 D 302
21
AE3
SOFTWARE
ASN D:211 , ASP D:224 , A12 D:302 , HOH D:411 , HOH D:417 , HOH D:431
binding site for residue CA D 303
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SAPs(SNPs)/Variants
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Asymmetric Unit 1
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Asym.Unit (436 KB)
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Biol.Unit 1 (428 KB)
Header - Biol.Unit 1
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