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4XRG
Asym. Unit
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Asym.Unit (493 KB)
Biol.Unit 1 (485 KB)
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Title
:
CRYSTAL STRUCTURE OF THE HOMOSPERMIDINE SYNTHASE (HSS) VARIANT H296S FROM BLASTOCHLORIS VIRIDIS IN COMPLEX WITH NAD, PUTRESCINE AND AGMATINE
Authors
:
S. Krossa
Date
:
21 Jan 15 (Deposition) - 27 Jan 16 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Homospermidine Synthase, Oxidoreductase, Transferase, Rossman Fold, Agmatine, Putrescine
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
S. Krossa, A. Faust, D. Ober, A. J. Scheidig
Comprehensive Structural Characterization Of The Bacterial Homospermidine Synthase-An Essential Enzyme Of The Polyamin Metabolism.
Sci Rep V. 6 19501 2016
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSa)
1b: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSb)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
3a: AGMATINE (AG2a)
3b: AGMATINE (AG2b)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
4b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5a: 1,4-DIAMINOBUTANE (PUTa)
5b: 1,4-DIAMINOBUTANE (PUTb)
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No.
Name
Count
Type
Full Name
1
1PS
2
Ligand/Ion
3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2
ACT
2
Ligand/Ion
ACETATE ION
3
AG2
2
Ligand/Ion
AGMATINE
4
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
5
PUT
2
Ligand/Ion
1,4-DIAMINOBUTANE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:20 , SER A:21 , ILE A:22 , ASP A:45 , PRO A:46 , SER A:47 , ALA A:65 , VAL A:66 , LEU A:91 , SER A:92 , VAL A:93 , THR A:95 , THR A:114 , VAL A:115 , GLY A:160 , ALA A:161 , ASN A:162 , PRO A:163 , TRP A:229 , SER A:230 , GLU A:237 , ILE A:350 , VAL A:400 , AG2 A:502 , PUT A:503 , HOH A:757 , HOH A:764 , HOH A:793 , HOH A:799 , HOH A:848 , HOH A:1019 , HOH A:1069 , HOH A:1138 , HOH A:1162
binding site for residue NAD A 501
02
AC2
SOFTWARE
ASN A:162 , GLU A:210 , TRP A:229 , GLU A:237 , VAL A:294 , THR A:295 , SER A:296 , TYR A:323 , NAD A:501 , PUT A:503 , HOH A:1091
binding site for residue AG2 A 502
03
AC3
SOFTWARE
ASN A:162 , GLU A:210 , TYR A:323 , LEU A:363 , NAD A:501 , AG2 A:502 , HOH A:1091
binding site for residue PUT A 503
04
AC4
SOFTWARE
SER A:47 , ASP A:48 , GLU A:49 , ASP A:347 , TRP A:348
binding site for residue 1PS A 504
05
AC5
SOFTWARE
MET A:338 , GLY A:342 , LYS A:343 , ARG A:344
binding site for residue 1PS A 505
06
AC6
SOFTWARE
PHE B:19 , GLY B:20 , SER B:21 , ILE B:22 , ASP B:45 , PRO B:46 , ALA B:65 , VAL B:66 , LEU B:91 , SER B:92 , VAL B:93 , THR B:95 , THR B:114 , VAL B:115 , GLY B:160 , ALA B:161 , ASN B:162 , PRO B:163 , TRP B:229 , SER B:230 , GLU B:237 , ILE B:350 , VAL B:400 , AG2 B:502 , PUT B:503 , HOH B:676 , HOH B:693 , HOH B:711 , HOH B:720 , HOH B:768 , HOH B:772 , HOH B:784 , HOH B:1070 , HOH B:1097 , HOH B:1106
binding site for residue NAD B 501
07
AC7
SOFTWARE
ASN B:162 , GLU B:210 , TRP B:229 , GLU B:237 , THR B:295 , SER B:296 , TYR B:323 , NAD B:501 , PUT B:503 , HOH B:871
binding site for residue AG2 B 502
08
AC8
SOFTWARE
ASN B:162 , GLU B:210 , TRP B:229 , TYR B:323 , NAD B:501 , AG2 B:502 , HOH B:871
binding site for residue PUT B 503
09
AC9
SOFTWARE
LYS B:171 , TRP B:194 , LEU B:425 , PHE B:427
binding site for residue ACT B 504
10
AD1
SOFTWARE
SER B:167 , VAL B:170 , LYS B:171 , ILE B:302 , PHE B:305 , LEU B:306 , ASP B:423
binding site for residue ACT B 505
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SAPs(SNPs)/Variants
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Asym.Unit (493 KB)
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